From 69308d7faa1a8c09711799f1279ebac91079e675 Mon Sep 17 00:00:00 2001
From: Pietro Incardona <incardon@mpi-cbg.de>
Date: Fri, 26 Jun 2015 18:23:14 +0200
Subject: [PATCH] Added missing files
---
Makefile.am | 3 +
src/csv_multiarray.hpp | 204 +++++++++++++++++++++++++++++++++++++++++
src/util.hpp | 172 ++++++++++++++++++++++++++++++++++
3 files changed, 379 insertions(+)
create mode 100755 Makefile.am
create mode 100644 src/csv_multiarray.hpp
create mode 100644 src/util.hpp
diff --git a/Makefile.am b/Makefile.am
new file mode 100755
index 0000000..7c618d3
--- /dev/null
+++ b/Makefile.am
@@ -0,0 +1,3 @@
+SUBDIRS = src
+
+bin_PROGRAMS =
\ No newline at end of file
diff --git a/src/csv_multiarray.hpp b/src/csv_multiarray.hpp
new file mode 100644
index 0000000..27b2f62
--- /dev/null
+++ b/src/csv_multiarray.hpp
@@ -0,0 +1,204 @@
+/*
+ * csv_multiarray_copy.hpp
+ *
+ * Created on: Jun 20, 2015
+ * Author: i-bird
+ */
+
+#ifndef CSV_MULTIARRAY_COPY_HPP_
+#define CSV_MULTIARRAY_COPY_HPP_
+
+
+
+/*! \brief This class is an helper to produce csv headers from multi-array
+ *
+ * Usage:
+ *
+ * \code{.cpp}
+ *
+ * float src[3];
+ *
+ * std::stringstream str;
+ * csv_col_str<float[3]> cp(std::string("test"),str);
+ *
+ * std::cout << str.str() << "\n";
+ *
+ * \endcode
+ *
+ * Will produce ",test[0],test[1],test[2]"
+ *
+ */
+template<typename T>
+struct csv_col_str
+{
+ inline csv_col_str(std::string prp, std::stringstream & str)
+ {
+ str << "," << prp;
+ }
+};
+
+//! Partial specialization for N=1 1D-Array
+template<typename T,size_t N1>
+struct csv_col_str<T[N1]>
+{
+ inline csv_col_str(std::string prp, std::stringstream & str)
+ {
+ for (size_t i = 0 ; i < N1 ; i++)
+ str << "," << prp << "_" << "[" << i << "]";
+ }
+};
+
+//! Partial specialization for N=2 2D-Array
+template<typename T,size_t N1,size_t N2>
+struct csv_col_str<T[N1][N2]>
+{
+ inline csv_col_str(std::string prp, std::stringstream & str)
+ {
+ for (size_t i1 = 0 ; i1 < N1 ; i1++)
+ {
+ for (size_t i2 = 0 ; i2 < N2 ; i2++)
+ {
+ str << "," << prp << "_" << "[" << i1 << "]" << "[" << i2 << "]";
+ }
+ }
+ }
+};
+
+//! Partial specialization for N=3
+template<typename T,size_t N1,size_t N2,size_t N3>
+struct csv_col_str<T[N1][N2][N3]>
+{
+ inline csv_col_str(std::string prp, std::stringstream & str)
+ {
+ for (size_t i1 = 0 ; i1 < N1 ; i1++)
+ {
+ for (size_t i2 = 0 ; i2 < N2 ; i2++)
+ {
+ for (size_t i3 = 0 ; i3 < N3 ; i3++)
+ {
+ str << "," << prp << "_" << "[" << i1 << "]" << "[" << i2 << "]" << "[" << i3 << "]";
+ }
+ }
+ }
+ }
+};
+
+//! Partial specialization for N=4
+template<typename T,size_t N1,size_t N2,size_t N3,size_t N4>
+struct csv_col_str<T[N1][N2][N3][N4]>
+{
+ inline csv_col_str(std::string prp, std::stringstream & str)
+ {
+ for (size_t i1 = 0 ; i1 < N1 ; i1++)
+ {
+ for (size_t i2 = 0 ; i2 < N2 ; i2++)
+ {
+ for (size_t i3 = 0 ; i3 < N3 ; i3++)
+ {
+ for (size_t i4 = 0 ; i4 < N4 ; i4++)
+ {
+ str << "," << prp << "_" << "[" << i1 << "]" << "[" << i2 << "]" << "[" << i3 << "]" << "[" << i4 << "]";
+ }
+ }
+ }
+ }
+ }
+};
+
+
+/*! \brief This class is an helper to produce csv data from multi-array
+ *
+ * Usage:
+ *
+ * \code{.cpp}
+ *
+ * float src[3] = {1.0,2.0,3.0};
+ *
+ * std::stringstream str;
+ * csv_value_str<float[3]> cp(src,str);
+ *
+ * std::cout << str.str() << "\n";
+ *
+ * \endcode
+ *
+ * Will produce ",1.0,2.0,3.0"
+ *
+ */
+template<typename T>
+struct csv_value_str
+{
+ inline csv_value_str(T & v, std::stringstream & str)
+ {
+ str << "," << v;
+ }
+};
+
+//! Partial specialization for N=1 1D-Array
+template<typename T,size_t N1>
+struct csv_value_str<T[N1]>
+{
+ inline csv_value_str(const T v[N1], std::stringstream & str)
+ {
+ for (size_t i = 0 ; i < N1 ; i++)
+ str << "," << v[i];
+ }
+};
+
+//! Partial specialization for N=2 2D-Array
+template<typename T,size_t N1,size_t N2>
+struct csv_value_str<T[N1][N2]>
+{
+ inline csv_value_str(const T v[N1][N2], std::stringstream & str)
+ {
+ for (size_t i1 = 0 ; i1 < N1 ; i1++)
+ {
+ for (size_t i2 = 0 ; i2 < N2 ; i2++)
+ {
+ str << "," << v[i1][i2];
+ }
+ }
+ }
+};
+
+//! Partial specialization for N=3
+template<typename T,size_t N1,size_t N2,size_t N3>
+struct csv_value_str<T[N1][N2][N3]>
+{
+ inline csv_value_str(const T v[N1][N2][N3], std::stringstream & str)
+ {
+ for (size_t i1 = 0 ; i1 < N1 ; i1++)
+ {
+ for (size_t i2 = 0 ; i2 < N2 ; i2++)
+ {
+ for (size_t i3 = 0 ; i3 < N3 ; i3++)
+ {
+ str << "," << v[i1][i2][i3];
+ }
+ }
+ }
+ }
+};
+
+//! Partial specialization for N=4
+template<typename T,size_t N1,size_t N2,size_t N3,size_t N4>
+struct csv_value_str<T[N1][N2][N3][N4]>
+{
+ inline csv_value_str(const T v[N1][N2][N3][N4], std::stringstream & str)
+ {
+ for (size_t i1 = 0 ; i1 < N1 ; i1++)
+ {
+ for (size_t i2 = 0 ; i2 < N2 ; i2++)
+ {
+ for (size_t i3 = 0 ; i3 < N3 ; i3++)
+ {
+ for (size_t i4 = 0 ; i4 < N4 ; i4++)
+ {
+ str << "," << v[i1][i2][i3][i4];
+ }
+ }
+ }
+ }
+ }
+};
+
+#endif /* CSV_MULTIARRAY_COPY_HPP_ */
diff --git a/src/util.hpp b/src/util.hpp
new file mode 100644
index 0000000..16d4252
--- /dev/null
+++ b/src/util.hpp
@@ -0,0 +1,172 @@
+/*
+ * util.hpp
+ *
+ * Created on: May 7, 2015
+ * Author: Pietro Incardona
+ */
+
+#ifndef UTIL_HPP_
+#define UTIL_HPP_
+
+#include <boost/iostreams/device/mapped_file.hpp>
+
+
+/*! \brief Compare two files, return true if they match
+ *
+ * \param file1 path1
+ * \param file2 path2
+ *
+ * \return true if they match
+ *
+ */
+bool compare(std::string file1, std::string file2)
+{
+ boost::iostreams::mapped_file_source f1(file1);
+ boost::iostreams::mapped_file_source f2(file2);
+
+ if( f1.size() == f2.size() && std::equal(f1.data(), f1.data() + f1.size(), f2.data()) )
+ return true;
+ else
+ return false;
+}
+
+struct RGB
+{
+ float R;
+ float G;
+ float B;
+
+ std::string toString()
+ {
+ return std::to_string(R) + " " + std::to_string(G) + " " + std::to_string(B);
+ }
+};
+
+/*! \brief Return the color sampled from one group
+ *
+ * groups:
+ *
+ * 0: Red
+ * 1: Green
+ * 2: Blue
+ * 3: Yellow
+ * 4: Cyan
+ * 5: Magenta
+ * 6: Orange
+ * 7: Chartreuse-Green
+ * 8: Spring Green
+ * 9: Azure
+ * 10: Violet
+ * 11: Rose
+ *
+ * \param group
+ *
+ */
+
+struct RGB getColor(int group, std::uniform_real_distribution<float> & d, std::default_random_engine & g)
+{
+ struct RGB col;
+
+ if (group == 0)
+ {
+ float s = d(g);
+ col.R = s/2 + 0.5;
+ col.G = 0.0;
+ col.B = 0.0;
+ }
+ else if (group == 1)
+ {
+ float s = d(g);
+ col.R = 0.0;
+ col.G = s/2 + 0.5;
+ col.B = 0.0;
+ }
+ else if (group == 2)
+ {
+ float s = d(g);
+ col.R = 0.0;
+ col.G = 0.0;
+ col.B = s;
+ }
+ else if (group == 3)
+ {
+ float s = d(g);
+ col.R = s/2 + 0.5;
+ col.G = s/2 + 0.5;
+ col.B = 0.0;
+ }
+ else if (group == 4)
+ {
+ float s = d(g);
+ col.R = s/2 + 0.5;
+ col.G = 0.0;
+ col.B = s/2 + 0.5;
+ }
+ else if (group == 5)
+ {
+ float s = d(g);
+ col.R = 0.0;
+ col.G = s/2 + 0.5;
+ col.B = s/2 + 0.5;
+ }
+ else if (group == 6)
+ {
+ float s = d(g);
+ col.R = s/2 + 0.5;
+ col.G = s/4 + 0.5;
+ col.B = 0.0;
+ }
+ else if (group == 7)
+ {
+ float s = d(g);
+ col.R = s/4 + 0.5;
+ col.G = s/2 + 0.5;
+ col.B = 0.0;
+ }
+ else if (group == 8)
+ {
+ float s = d(g);
+ col.R = 0.0;
+ col.G = s/2 + 0.5;
+ col.B = s/4 + 0.5;
+ }
+ else if (group == 9)
+ {
+ float s = d(g);
+ col.R = 0.0;
+ col.G = s/4 + 0.5;
+ col.B = s/2 + 0.5;
+ }
+ else if (group == 10)
+ {
+ float s = d(g);
+ col.R = s/4 + 0.5;
+ col.G = 0.0;
+ col.B = s/2 + 0.5;
+ }
+ else if (group == 11)
+ {
+ float s = d(g);
+ col.R = s/2 + 0.5;
+ col.G = 0.0;
+ col.B = s/4 + 0.5;
+ }
+
+ return col;
+}
+
+/*! \brief Check if one string end with a particular string
+ *
+ * \param fullString string to check
+ * \param ending ending string to check
+ *
+ */
+bool hasEnding (std::string const &fullString, std::string const &ending)
+{
+ if (fullString.length() >= ending.length())
+ {return (0 == fullString.compare (fullString.length() - ending.length(), ending.length(), ending));}
+ else
+ {return false;}
+}
+
+#endif /* UTIL_HPP_ */
--
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