From 01063412cb52d4fab9c0d001c6153c1e8d17edab Mon Sep 17 00:00:00 2001
From: Pietro Incardona <incardon@mpi-cbg.de>
Date: Sun, 28 Jul 2019 16:12:24 +0200
Subject: [PATCH] Fixing performance tests
---
openfpm_data | 2 +-
.../performance/grid_dist_performance.hpp | 23 +-
.../performance/cell_list_comp_reorder.hpp | 229 ++++--------
.../performance/cell_list_part_reorder.hpp | 250 +++++--------
.../performance/cl_comp_performance_graph.hpp | 191 ----------
.../performance/cl_part_performance_graph.hpp | 209 -----------
.../performance/verlet_performance_tests.hpp | 353 +++++-------------
7 files changed, 265 insertions(+), 992 deletions(-)
delete mode 100644 src/Vector/performance/cl_comp_performance_graph.hpp
delete mode 100644 src/Vector/performance/cl_part_performance_graph.hpp
diff --git a/openfpm_data b/openfpm_data
index cbef620db..574337495 160000
--- a/openfpm_data
+++ b/openfpm_data
@@ -1 +1 @@
-Subproject commit cbef620db71cbd6beb13eb11f139f1cdbfce8ae3
+Subproject commit 57433749597405b0f70b9735c149285d5af059fa
diff --git a/src/Grid/performance/grid_dist_performance.hpp b/src/Grid/performance/grid_dist_performance.hpp
index e157842f3..368c2b9b2 100644
--- a/src/Grid/performance/grid_dist_performance.hpp
+++ b/src/Grid/performance/grid_dist_performance.hpp
@@ -342,21 +342,24 @@ BOOST_AUTO_TEST_CASE(grid_iterator_performance_write_report_final)
report_grid_iterator.graphs.add("graphs.graph(2).x.data(0).source","performance.interpolation.m2p(#).grid.x");
report_grid_iterator.graphs.add("graphs.graph(2).options.log_y","true");
- boost::property_tree::xml_writer_settings<std::string> settings(' ', 4);
- boost::property_tree::write_xml("grid_performance.xml", report_grid_iterator.graphs,std::locale(),settings);
+ if (create_vcluster().rank() == 0)
+ {
+ boost::property_tree::xml_writer_settings<std::string> settings(' ', 4);
+ boost::property_tree::write_xml("grid_performance.xml", report_grid_iterator.graphs,std::locale(),settings);
- GoogleChart cg;
+ GoogleChart cg;
- std::string file_xml_ref(test_dir);
- file_xml_ref += std::string("/openfpm_pdata/grid_performance_ref.xml");
+ std::string file_xml_ref(test_dir);
+ file_xml_ref += std::string("/openfpm_pdata/grid_performance_ref.xml");
- StandardXMLPerformanceGraph("grid_performance.xml",file_xml_ref,cg);
+ StandardXMLPerformanceGraph("grid_performance.xml",file_xml_ref,cg);
- if (create_vcluster().getProcessUnitID() == 0)
- {
- addUpdtateTime(cg);
+ if (create_vcluster().getProcessUnitID() == 0)
+ {
+ addUpdtateTime(cg,create_vcluster().size());
- cg.write("grid_performance.html");
+ cg.write("grid_performance.html");
+ }
}
}
diff --git a/src/Vector/performance/cell_list_comp_reorder.hpp b/src/Vector/performance/cell_list_comp_reorder.hpp
index 0f3747423..eb17be9fa 100644
--- a/src/Vector/performance/cell_list_comp_reorder.hpp
+++ b/src/Vector/performance/cell_list_comp_reorder.hpp
@@ -12,7 +12,6 @@
#include "data_type/aggregate.hpp"
#include "Plot/GoogleChart.hpp"
#include "vector_dist_performance_util.hpp"
-#include "cl_comp_performance_graph.hpp"
// Property tree
struct report_cell_list_func_tests
@@ -38,24 +37,6 @@ size_t k_min = 15000;
// Numbers of particles vector
openfpm::vector<size_t> n_particles;
-// Vectors to store the data for 2D
-openfpm::vector<openfpm::vector<double>> time_rand_mean;
-openfpm::vector<openfpm::vector<double>> time_hilb_mean;
-openfpm::vector<openfpm::vector<double>> time_rand_dev;
-openfpm::vector<openfpm::vector<double>> time_hilb_dev;
-openfpm::vector<openfpm::vector<double>> time_create_rand_mean;
-openfpm::vector<openfpm::vector<double>> time_create_hilb_mean;
-openfpm::vector<openfpm::vector<double>> time_create_rand_dev;
-openfpm::vector<openfpm::vector<double>> time_create_hilb_dev;
-// Vectors to store the data for 3D
-openfpm::vector<openfpm::vector<double>> time_rand_2_mean;
-openfpm::vector<openfpm::vector<double>> time_hilb_2_mean;
-openfpm::vector<openfpm::vector<double>> time_rand_2_dev;
-openfpm::vector<openfpm::vector<double>> time_hilb_2_dev;
-openfpm::vector<openfpm::vector<double>> time_create_rand_2_mean;
-openfpm::vector<openfpm::vector<double>> time_create_hilb_2_mean;
-openfpm::vector<openfpm::vector<double>> time_create_rand_2_dev;
-openfpm::vector<openfpm::vector<double>> time_create_hilb_2_dev;
/*! \brief Function for random cell list test
*
@@ -63,19 +44,8 @@ openfpm::vector<openfpm::vector<double>> time_create_hilb_2_dev;
template<unsigned int dim> void cell_list_getCellList_calc_force_benchmark(size_t cl_k_start,
size_t cl_k_min,
openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_rand_dev)
+ openfpm::vector<size_t> & cl_n_particles)
{
- report_cl_funcs.graphs.put("performance.celllist.dim",std::to_string(dim));
-
- cl_time_rand_mean.resize(cl_r_cutoff.size());
- cl_time_create_rand_mean.resize(cl_r_cutoff.size());
- cl_time_rand_dev.resize(cl_r_cutoff.size());
- cl_time_create_rand_dev.resize(cl_r_cutoff.size());
-
std::string str("Testing " + std::to_string(dim) + "D vector, no order, cell-list");
print_test_v(str,0);
@@ -104,6 +74,8 @@ template<unsigned int dim> void cell_list_getCellList_calc_force_benchmark(size_
BOOST_TEST_CHECKPOINT( "Testing " << dim << "D vector with a random cell list k=" << k_int );
report_cl_funcs.graphs.put("performance.celllist.getCellList" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+ report_cl_funcs.graphs.put("performance.celllist.calc_forces" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+
if (cl_n_particles.size() < k_count)
cl_n_particles.add(k_int);
@@ -143,9 +115,6 @@ template<unsigned int dim> void cell_list_getCellList_calc_force_benchmark(size_
standard_deviation(measures,sum_cl_mean,sum_cl_dev);
//Average total time
- cl_time_create_rand_mean.get(r).add(sum_cl_mean);
- cl_time_create_rand_dev.get(r).add(sum_cl_dev);
-
report_cl_funcs.graphs.put("performance.celllist.getCellList" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_cl_mean);
report_cl_funcs.graphs.put("performance.celllist.getCellList" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_cl_dev);
@@ -159,9 +128,6 @@ template<unsigned int dim> void cell_list_getCellList_calc_force_benchmark(size_
{measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));}
standard_deviation(measures,sum_fr_mean,sum_fr_dev);
- cl_time_rand_mean.get(r).add(sum_fr_mean);
- cl_time_rand_dev.get(r).add(sum_fr_dev);
-
report_cl_funcs.graphs.put("performance.celllist.calc_forces" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_fr_mean);
report_cl_funcs.graphs.put("performance.celllist.calc_forces" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_fr_dev);
@@ -180,19 +146,10 @@ template<unsigned int dim> void cell_list_getCellList_calc_force_benchmark(size_
template<unsigned int dim> void cell_list_getCellList_hilb_calc_force_benchmark(size_t cl_k_start,
size_t cl_k_min,
openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<openfpm::vector<double>> & cl_time_force_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_force_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_dev)
+ openfpm::vector<size_t> & cl_n_particles)
{
report_cl_funcs.graphs.put("performance.celllist.dim",std::to_string(dim));
- cl_time_force_mean.resize(cl_r_cutoff.size());
- cl_time_create_mean.resize(cl_r_cutoff.size());
- cl_time_force_dev.resize(cl_r_cutoff.size());
- cl_time_create_dev.resize(cl_r_cutoff.size());
-
std::string str("Testing " + std::to_string(dim) + "D vector, Hilbert comp reorder, cell list");
print_test_v(str,0);
@@ -221,6 +178,7 @@ template<unsigned int dim> void cell_list_getCellList_hilb_calc_force_benchmark(
BOOST_TEST_CHECKPOINT( "Testing " << dim << "D vector with an Hilbert cell list k=" << k_int );
report_cl_funcs.graphs.put("performance.celllist.getCellList_hilb" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+ report_cl_funcs.graphs.put("performance.celllist.calc_forces_hilb" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
if (cl_n_particles.size() < k_count)
cl_n_particles.add(k_int);
@@ -258,8 +216,6 @@ template<unsigned int dim> void cell_list_getCellList_hilb_calc_force_benchmark(
{measures.add(benchmark_get_celllist_hilb(NN,vd,r_cut));}
standard_deviation(measures,sum_cl_mean,sum_cl_dev);
//Average total time
- cl_time_create_mean.get(r).add(sum_cl_mean);
- cl_time_create_dev.get(r).add(sum_cl_dev);
report_cl_funcs.graphs.put("performance.celllist.getCellList_hilb" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_cl_mean);
report_cl_funcs.graphs.put("performance.celllist.getCellList_hilb" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_cl_dev);
@@ -277,9 +233,6 @@ template<unsigned int dim> void cell_list_getCellList_hilb_calc_force_benchmark(
{measures.add(benchmark_calc_forces_hilb<dim>(NN,vd,r_cut));}
standard_deviation(measures,sum_fr_mean,sum_fr_dev);
- cl_time_force_mean.get(r).add(sum_fr_mean);
- cl_time_force_dev.get(r).add(sum_fr_dev);
-
report_cl_funcs.graphs.put("performance.celllist.calc_forces_hilb" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_fr_mean);
report_cl_funcs.graphs.put("performance.celllist.calc_forces_hilb" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_fr_dev);
@@ -300,21 +253,13 @@ BOOST_AUTO_TEST_CASE( vector_dist_celllist_random_test )
cell_list_getCellList_calc_force_benchmark<3>(k_start,
k_min,
r_cutoff,
- n_particles,
- time_rand_mean,
- time_rand_dev,
- time_create_rand_mean,
- time_create_rand_dev);
+ n_particles);
cell_list_getCellList_calc_force_benchmark<2>(k_start,
k_min,
r_cutoff,
- n_particles,
- time_rand_2_mean,
- time_rand_2_dev,
- time_create_rand_2_mean,
- time_create_rand_2_dev);
+ n_particles);
}
BOOST_AUTO_TEST_CASE( vector_dist_celllist_hilbert_test )
@@ -323,69 +268,24 @@ BOOST_AUTO_TEST_CASE( vector_dist_celllist_hilbert_test )
cell_list_getCellList_hilb_calc_force_benchmark<3>(k_start,
k_min,
r_cutoff,
- n_particles,
- time_hilb_mean,
- time_hilb_dev,
- time_create_hilb_mean,
- time_create_hilb_dev);
+ n_particles);
cell_list_getCellList_hilb_calc_force_benchmark<2>(k_start,
k_min,
r_cutoff,
- n_particles,
- time_hilb_2_mean,
- time_hilb_2_dev,
- time_create_hilb_2_mean,
- time_create_hilb_2_dev);
+ n_particles);
}
-/*! \brief Function for cell list hilb performance report
- *
- */
-template<unsigned int dim> void cell_list_comp_reorder_report(GoogleChart & cg,
- openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<openfpm::vector<double>> & cl_time_hilb_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_hilb_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_hilb_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_hilb_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_rand_dev,
- double & warning_level,
- double & norm)
-{
- cl_comp_normal_vs_hilbert_force_time<dim>(cg,
- cl_n_particles,
- cl_r_cutoff,
- cl_time_hilb_mean,
- cl_time_rand_mean,
- cl_time_hilb_dev,
- cl_time_rand_dev,
- warning_level,
- norm);
-
- cl_comp_normal_vs_hilbert_create_time<dim>(cg,
- cl_n_particles,
- cl_r_cutoff,
- cl_time_create_hilb_mean,
- cl_time_create_rand_mean,
- cl_time_create_hilb_dev,
- cl_time_create_rand_dev,
- warning_level,
- norm);
-}
BOOST_AUTO_TEST_CASE(vector_dist_cl_performance_write_report)
{
// Create a graphs
//For different r_cut
-/* for (size_t r = 0; r < r_cutoff.size(); r++ )
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
{
report_cl_funcs.graphs.put("graphs.graph(" + std::to_string(r) + ").type","line");
- report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r) + ").title","getCellList performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r) + ").title","getCellList 3D performance r_cut=" + std::to_string(r_cutoff.get(r)));
report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r) + ").x.title","number of particles");
report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r) + ").y.title","Time seconds");
report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(0).source","performance.celllist.getCellList_hilb3D(" + std::to_string(r) + ").npart(#).mean");
@@ -397,61 +297,70 @@ BOOST_AUTO_TEST_CASE(vector_dist_cl_performance_write_report)
report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r) + ").options.log_y","true");
}
- boost::property_tree::xml_writer_settings<std::string> settings(' ', 4);
- boost::property_tree::write_xml("celllist_performance.xml", report_cl_funcs.graphs,std::locale(),settings);*/
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
+ {
+ report_cl_funcs.graphs.put("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").type","line");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").title","calc_force 3D performance (Note hilbert require space filling curve pre-calculation) r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").x.title","number of particles");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.title","Time seconds");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.data(0).source","performance.celllist.calc_forces_hilb3D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").x.data(0).source","performance.celllist.calc_forces_hilb3D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.data(0).title","Cell-list hilbert");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.data(1).source","performance.celllist.calc_forces3D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").x.data(1).source","performance.celllist.calc_forces3D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.data(1).title","Cell-list normal");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").options.log_y","true");
+ }
- GoogleChart cg;
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
+ {
+ report_cl_funcs.graphs.put("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").type","line");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").title","getCellList 2D performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").x.title","number of particles");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.title","Time seconds");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.data(0).source","performance.celllist.getCellList_hilb2D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").x.data(0).source","performance.celllist.getCellList_hilb2D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.data(0).title","Cell-list hilbert");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.data(1).source","performance.celllist.getCellList2D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").x.data(1).source","performance.celllist.getCellList2D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.data(1).title","Cell-list normal");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").options.log_y","true");
+ }
- std::string file_xml_ref(test_dir);
- file_xml_ref += std::string("/openfpm_pdata/celllist_performance_ref.xml");
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
+ {
+ report_cl_funcs.graphs.put("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").type","line");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").title","calc_force 2D performance (Note hilbert require space filling curve pre-calculation) r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").x.title","number of particles");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.title","Time seconds");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.data(0).source","performance.celllist.calc_forces_hilb2D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").x.data(0).source","performance.celllist.calc_forces_hilb2D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.data(0).title","Cell-list hilbert");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.data(1).source","performance.celllist.calc_forces2D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").x.data(1).source","performance.celllist.calc_forces2D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.data(1).title","Cell-list normal");
+ report_cl_funcs.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").options.log_y","true");
+ }
- StandardXMLPerformanceGraph("celllist_performance.xml",file_xml_ref,cg);
+ if (create_vcluster().rank() == 0)
+ {
+ boost::property_tree::xml_writer_settings<std::string> settings(' ', 4);
+ boost::property_tree::write_xml("celllist_performance.xml", report_cl_funcs.graphs,std::locale(),settings);
- addUpdtateTime(cg);
+ GoogleChart cg;
- cg.write("celllist_performance.html");
+ std::string file_xml_ref(test_dir);
+ file_xml_ref += std::string("/openfpm_pdata/celllist_performance_ref.xml");
-/*
- GoogleChart cg;
-
- double warning_level = 0;
- double norm = 0;
-
- //Write report for 2D and 3D
- cell_list_comp_reorder_report<3>(cg,
- r_cutoff,
- n_particles,
- time_hilb_mean,
- time_rand_mean,
- time_hilb_dev,
- time_rand_dev,
- time_create_hilb_mean,
- time_create_rand_mean,
- time_create_hilb_dev,
- time_create_rand_dev,
- warning_level,
- norm);
-
- cell_list_comp_reorder_report<2>(cg,
- r_cutoff,
- n_particles,
- time_hilb_2_mean,
- time_rand_2_mean,
- time_rand_2_dev,
- time_hilb_2_dev,
- time_create_hilb_2_mean,
- time_create_rand_2_mean,
- time_create_hilb_2_dev,
- time_create_rand_2_dev,
- warning_level,
- norm);
-
- addUpdtateTime(cg);
-
- if (create_vcluster().getProcessUnitID() == 0)
- {
- cg.write("Celllist_comp_ord.html");
- }*/
+ StandardXMLPerformanceGraph("celllist_performance.xml",file_xml_ref,cg);
+
+ addUpdtateTime(cg,create_vcluster().size());
+
+ cg.write("celllist_performance.html");
+ }
}
diff --git a/src/Vector/performance/cell_list_part_reorder.hpp b/src/Vector/performance/cell_list_part_reorder.hpp
index 07ca16f6d..a8ee37e27 100644
--- a/src/Vector/performance/cell_list_part_reorder.hpp
+++ b/src/Vector/performance/cell_list_part_reorder.hpp
@@ -12,9 +12,15 @@
#include "Vector/vector_dist.hpp"
#include "data_type/aggregate.hpp"
#include "Plot/GoogleChart.hpp"
-#include "cl_part_performance_graph.hpp"
#include <functional>
+// Property tree
+struct report_cell_list_preord_tests
+{
+ boost::property_tree::ptree graphs;
+};
+
+report_cell_list_preord_tests report_cl_preo;
BOOST_AUTO_TEST_SUITE( celllist_part_reorder_performance_test )
@@ -37,20 +43,6 @@ size_t k_min = 15000;
// Numbers of particles vector
openfpm::vector<size_t> n_particles;
-// Vectors to store the data for 2D
-openfpm::vector<openfpm::vector<double>> time_rand_mean;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_hilb_mean;
-openfpm::vector<openfpm::vector<double>> time_rand_dev;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_hilb_dev;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_reorder_mean;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_reorder_dev;
-// Vectors to store the data for 3D
-openfpm::vector<openfpm::vector<double>> time_rand_2_mean;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_hilb_2_mean;
-openfpm::vector<openfpm::vector<double>> time_rand_2_dev;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_hilb_2_dev;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_reorder_2_mean;
-openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_reorder_2_dev;
/*! \brief Function for cell list test without an Hilbert curve reordering (unordered positioning)
@@ -59,13 +51,8 @@ openfpm::vector<openfpm::vector<openfpm::vector<double>>> time_reorder_2_dev;
template<unsigned int dim> void cell_list_part_reorder_random_benchmark(size_t cl_k_start,
size_t cl_k_min,
openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_dev)
+ openfpm::vector<size_t> & cl_n_particles)
{
- cl_time_rand_mean.resize(cl_r_cutoff.size());
- cl_time_rand_dev.resize(cl_r_cutoff.size());
-
std::string str("Testing " + std::to_string(dim) + "D vector, no-order, Cell-list");
print_test_v(str,0);
@@ -78,17 +65,23 @@ template<unsigned int dim> void cell_list_part_reorder_random_benchmark(size_t c
//Cut-off radius
float r_cut = cl_r_cutoff.get(r);
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").rcut",r_cut);
+
//Number of particles
size_t k = cl_k_start * v_cl.getProcessingUnits();
//Counter number for amounts of particles
size_t k_count = 1 + log2(k/cl_k_min);
+ int c = 0;
+
//For different number of particles
for (size_t k_int = k ; k_int >= cl_k_min ; k_int/=2 )
{
BOOST_TEST_CHECKPOINT( "Testing " << dim << "D vector without an Hilbert curve reordering k=" << k_int );
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+
if (cl_n_particles.size() < k_count)
cl_n_particles.add(k_int);
@@ -126,14 +119,16 @@ template<unsigned int dim> void cell_list_part_reorder_random_benchmark(size_t c
openfpm::vector<double> measures;
for ( ; l < N_STAT_TEST; l++)
- measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));
+ {measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));}
standard_deviation(measures,sum_fr_mean,sum_fr_dev);
- cl_time_rand_mean.get(r).add(sum_fr_mean);
- cl_time_rand_dev.get(r).add(sum_fr_dev);
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_fr_mean);
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_fr_dev);
if (v_cl.getProcessUnitID() == 0)
- std::cout << "Cut-off = " << r_cut << ", Particles = " << k_int << " time to calculate forces: " << sum_fr_mean << " dev: " << sum_fr_dev << std::endl;
+ {std::cout << "Cut-off = " << r_cut << ", Particles = " << k_int << " time to calculate forces: " << sum_fr_mean << " dev: " << sum_fr_dev << std::endl;}
+
+ c++;
}
}
}
@@ -149,40 +144,9 @@ template<unsigned int dim> void cell_list_part_reorder_hilbert_benchmark(size_t
double dist,
openfpm::vector<float> & cl_r_cutoff,
openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<size_t> &cl_orders,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> &cl_time_hilb_mean,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> &cl_time_reorder_hilb_mean,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> &cl_time_hilb_dev,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> &cl_time_reorder_hilb_dev)
+ openfpm::vector<size_t> &cl_orders)
{
{
- cl_time_hilb_mean.resize(cl_r_cutoff.size());
- cl_time_hilb_dev.resize(cl_r_cutoff.size());
- for (size_t r = 0; r < cl_time_hilb_mean.size(); r++)
- {
- cl_time_hilb_mean.get(r).resize(cl_n_particles.size());
- cl_time_hilb_dev.get(r).resize(cl_n_particles.size());
- for (size_t k = 0; k < cl_time_hilb_mean.get(r).size(); k++)
- {
- cl_time_hilb_mean.get(r).get(k).resize(cl_orders.size());
- cl_time_hilb_dev.get(r).get(k).resize(cl_orders.size());
- }
- }
-
-
- cl_time_reorder_hilb_mean.resize(cl_r_cutoff.size());
- cl_time_reorder_hilb_dev.resize(cl_r_cutoff.size());
- for (size_t r = 0; r < cl_time_reorder_hilb_mean.size(); r++)
- {
- cl_time_reorder_hilb_mean.get(r).resize(cl_n_particles.size());
- cl_time_reorder_hilb_dev.get(r).resize(cl_n_particles.size());
- for (size_t k = 0; k < cl_time_reorder_hilb_mean.get(r).size(); k++)
- {
- cl_time_reorder_hilb_mean.get(r).get(k).resize(cl_orders.size());
- cl_time_reorder_hilb_dev.get(r).get(k).resize(cl_orders.size());
- }
- }
-
// Print test
std::string str("Testing " + std::to_string(dim) + "D vector, Hilbert curve reordering, Cell-List");
print_test_v(str,0);
@@ -204,10 +168,15 @@ template<unsigned int dim> void cell_list_part_reorder_hilbert_benchmark(size_t
size_t m = cl_orders.get(i);
size_t part = 0;
+ int c = 0;
+
for (size_t k_int = k ; k_int >= cl_k_min ; k_int/=2, part++ )
{
BOOST_TEST_CHECKPOINT( "Testing " << dim << "D vector with an Hilbert curve reordering k=" << k_int );
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").rcut",r_cut);
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+
Box<dim,float> box;
for (size_t i = 0; i < dim; i++)
@@ -220,7 +189,7 @@ template<unsigned int dim> void cell_list_part_reorder_hilbert_benchmark(size_t
size_t bc[dim];
for (size_t i = 0; i < dim; i++)
- bc[i] = PERIODIC;
+ {bc[i] = PERIODIC;}
vector_dist<dim,float, aggregate<float[dim]> > vd(k_int,box,bc,Ghost<dim,float>(r_cut));
@@ -235,13 +204,9 @@ template<unsigned int dim> void cell_list_part_reorder_hilbert_benchmark(size_t
openfpm::vector<double> measures;
for (size_t h = 0 ; h < N_STAT_TEST; h++)
- measures.add(benchmark_reorder(vd,m));
+ {measures.add(benchmark_reorder(vd,m));}
standard_deviation(measures,sum_reorder_mean,sum_reorder_dev);
- //Average reorder time
- cl_time_reorder_hilb_mean.get(r).get(part).get(i) = sum_reorder_mean;
- cl_time_reorder_hilb_dev.get(r).get(part).get(i) = sum_reorder_dev;
-
vd.template ghost_get<0>();
//Get cell list
@@ -256,15 +221,16 @@ template<unsigned int dim> void cell_list_part_reorder_hilbert_benchmark(size_t
measures.clear();
for (size_t l = 0 ; l < N_STAT_TEST ; l++)
- measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));
+ {measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));}
standard_deviation(measures,sum_fr_mean,sum_fr_dev);
- cl_time_hilb_mean.get(r).get(part).get(i) = sum_fr_mean;
- cl_time_hilb_dev.get(r).get(part).get(i) = sum_fr_dev;
-
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_fr_mean);
+ report_cl_preo.graphs.put("performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_fr_dev);
if (v_cl.getProcessUnitID() == 0)
- std::cout << "Cut-off = " << r_cut << ", Particles = " << k_int << ". Time to reorder: " << sum_reorder_mean << " dev: " << sum_reorder_dev << " time calculate forces: " << sum_fr_mean << " dev: " << sum_fr_dev << std::endl;
+ {std::cout << "Cut-off = " << r_cut << ", Particles = " << k_int << ". Time to reorder: " << sum_reorder_mean << " dev: " << sum_reorder_dev << " time calculate forces: " << sum_fr_mean << " dev: " << sum_fr_dev << std::endl;}
+
+ c++;
}
}
}
@@ -272,53 +238,11 @@ template<unsigned int dim> void cell_list_part_reorder_hilbert_benchmark(size_t
}
-
-/*! \brief Function for cell list performance report
- *
- */
-template<unsigned int dim> void cell_list_part_reorder_report(GoogleChart & cg,
- size_t n_moving,
- openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<size_t> cl_orders,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_hilb_mean,
- openfpm::vector<openfpm::vector<double>> cl_time_rand_mean,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_reorder_mean,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_hilb_dev,
- openfpm::vector<openfpm::vector<double>> cl_time_rand_dev,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_reorder_dev)
-{
- openfpm::vector<size_t> x;
-
- for (size_t i = 0; i < cl_n_particles.size() ; i++)
- x.add(cl_n_particles.get(i));
-
- // Speedup graphs data
-
- cl_part_time<dim>(cg,
- cl_n_particles,
- cl_r_cutoff,
- cl_orders,
- cl_time_hilb_mean,
- cl_time_rand_mean,
- cl_time_hilb_dev,
- cl_time_rand_dev);
-
- cl_part_reorder_time<dim>(cg,
- cl_n_particles,
- cl_r_cutoff,
- cl_orders,
- cl_time_reorder_mean,
- cl_time_reorder_dev);
-}
-
-
-
BOOST_AUTO_TEST_CASE( vector_dist_cl_random_test )
{
//Benchmark test for 2D and 3D
- cell_list_part_reorder_random_benchmark<3>(k_start,k_min,r_cutoff,n_particles,time_rand_mean,time_rand_dev);
- cell_list_part_reorder_random_benchmark<2>(k_start,k_min,r_cutoff,n_particles,time_rand_2_mean,time_rand_2_dev);
+ cell_list_part_reorder_random_benchmark<3>(k_start,k_min,r_cutoff,n_particles);
+ cell_list_part_reorder_random_benchmark<2>(k_start,k_min,r_cutoff,n_particles);
}
BOOST_AUTO_TEST_CASE( vector_dist_cl_hilbert_test )
@@ -330,11 +254,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_cl_hilbert_test )
dist,
r_cutoff,
n_particles,
- orders,
- time_hilb_mean,
- time_reorder_mean,
- time_hilb_dev,
- time_reorder_dev);
+ orders);
cell_list_part_reorder_hilbert_benchmark<2>(k_start,
k_min,
@@ -342,46 +262,70 @@ BOOST_AUTO_TEST_CASE( vector_dist_cl_hilbert_test )
dist,
r_cutoff,
n_particles,
- orders,
- time_hilb_2_mean,
- time_reorder_2_mean,
- time_hilb_2_dev,
- time_reorder_2_dev);
+ orders);
}
BOOST_AUTO_TEST_CASE(vector_dist_cl_performance_write_report)
{
- GoogleChart cg;
-
- //Write report for 2D and 3D
- cell_list_part_reorder_report<3>(cg,
- n_moving,
- r_cutoff,
- n_particles,
- orders,
- time_hilb_mean,
- time_rand_mean,
- time_reorder_mean,
- time_hilb_dev,
- time_rand_dev,
- time_reorder_dev);
-
- cell_list_part_reorder_report<2>(cg,
- n_moving,
- r_cutoff,
- n_particles,
- orders,
- time_hilb_2_mean,
- time_rand_2_mean,
- time_reorder_2_mean,
- time_hilb_2_dev,
- time_rand_2_dev,
- time_reorder_2_dev);
-
- addUpdtateTime(cg);
-
- if (create_vcluster().getProcessUnitID() == 0)
- cg.write("Celllist_part_ord.html");
+ // Create a graphs
+
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
+ {
+ report_cl_preo.graphs.put("graphs.graph(" + std::to_string(r) + ").type","line");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").title","calc_force 3D with reordered particles performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").x.title","number of particles");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").y.title","Time seconds");
+ for (size_t i = 0 ; i < orders.size() ; i++)
+ {
+ size_t m = orders.get(i);
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(" + std::to_string(i+1) + ").source","performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered3D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").x.data(" + std::to_string(i+1) + ").source","performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered3D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(" + std::to_string(i+1) + ").title","Hilbert(" + std::to_string(m) + ") reorder");
+ }
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(0).source","performance.celllist.calc_forces_reordered3D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").x.data(0).source","performance.celllist.calc_forces_reordered3D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(0).title","Random reorder");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r) + ").options.log_y","true");
+ }
+
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
+ {
+ report_cl_preo.graphs.put("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").type","line");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").title","calc_force 2D with reordered particles performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").x.title","number of particles");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").y.title","Time seconds");
+ for (size_t i = 0 ; i < orders.size() ; i++)
+ {
+ size_t m = orders.get(i);
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").y.data(" + std::to_string(i+1) + ").source","performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered2D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").x.data(" + std::to_string(i+1) + ").source","performance.celllist.calc_forces_hilb(" + std::to_string(m) + ")_reordered2D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").y.data(" + std::to_string(i+1) + ").title","Hilbert(" + std::to_string(m) + ") reorder");
+ }
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").y.data(0).source","performance.celllist.calc_forces_reordered2D(" + std::to_string(r) + ").npart(#).mean");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").x.data(0).source","performance.celllist.calc_forces_reordered2D(" + std::to_string(r) + ").npart(#).n");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").y.data(0).title","Random reorder");
+ report_cl_preo.graphs.add("graphs.graph(" + std::to_string(r + r_cutoff.size()) + ").options.log_y","true");
+ }
+
+ if (create_vcluster().rank() == 0)
+ {
+ boost::property_tree::xml_writer_settings<std::string> settings(' ', 4);
+ boost::property_tree::write_xml("celllist_partreo_performance.xml", report_cl_preo.graphs,std::locale(),settings);
+
+ std::string file_xml_ref(test_dir);
+ file_xml_ref += std::string("/openfpm_pdata/celllist_partreo_performance_ref.xml");
+
+ GoogleChart cg;
+
+ StandardXMLPerformanceGraph("celllist_partreo_performance.xml",file_xml_ref,cg);
+
+ addUpdtateTime(cg,create_vcluster().size());
+
+ if (create_vcluster().getProcessUnitID() == 0)
+ {cg.write("celllist_part_ord.html");}
+ }
}
BOOST_AUTO_TEST_SUITE_END()
diff --git a/src/Vector/performance/cl_comp_performance_graph.hpp b/src/Vector/performance/cl_comp_performance_graph.hpp
deleted file mode 100644
index feedf4d33..000000000
--- a/src/Vector/performance/cl_comp_performance_graph.hpp
+++ /dev/null
@@ -1,191 +0,0 @@
-/*
- * performance_graph.hpp
- *
- * Created on: Dec 23, 2016
- * Author: i-bird
- */
-
-#ifndef SRC_VECTOR_PERFORMANCE_CL_COMP_PERFORMANCE_GRAPH_HPP_
-#define SRC_VECTOR_PERFORMANCE_CL_COMP_PERFORMANCE_GRAPH_HPP_
-
-#include "Plot/GoogleChart.hpp"
-#include "vector_dist_performance_util.hpp"
-
-/////////////////////////// COMPUTATIONAL HILBERT CURVE ORDERING ///////////////////////////////////////
-
-/*! \brief Time to calculate forces using random order or hilber curve compute ordering
- *
- * \tparam dim dimensionality of the test
- *
- * \param cg GoogleChart object
- * \param cl_n_particles number of particles for each test
- * \param cl_r_cutoff cell-list spacing used to construct a cell-list
- * \param cl_time_hilb for each particle set, for each cut-off radius time to calculate the forces (Hilbert curve order)
- * \param cl_time_rand for each particle set, for each cut-off radius, time to calculate the forces (no order)
- *
- */
-template<unsigned int dim> void cl_comp_normal_vs_hilbert_force_time(GoogleChart & cg,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<openfpm::vector<double>> & cl_time_hilb_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_hilb_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_rand_dev,
- double & warning_level,
- double & norm)
-{
- std::string file_mean(test_dir);
- std::string file_var(test_dir);
- file_mean += std::string("/openfpm_pdata/cl_comp_norm_hilbert_mean_" + std::to_string(dim) + std::string("_ref"));
- file_var += std::string("/openfpm_pdata/cl_comp_norm_hilbert_dev_" + std::to_string(dim) + std::string("_ref"));
-
- std::string file_mean_save = std::string("cl_comp_norm_hilbert_mean_" + std::to_string(dim) + std::to_string("_ref"));
- std::string file_var_save = std::string("cl_comp_norm_hilbert_dev_" + std::to_string(dim) + std::to_string("_ref"));
-
- openfpm::vector<size_t> xp = cl_n_particles;
-
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_mean;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_dev;
-
- openfpm::vector<std::string> names;
- openfpm::vector<std::string> gnames;
-
- yp_mean.resize(cl_time_rand_mean.size());
- yp_dev.resize(cl_time_rand_dev.size());
- for (size_t i = 0 ; i < yp_mean.size() ; i++)
- {
- yp_mean.get(i).resize(cl_time_rand_mean.get(i).size());
- yp_dev.get(i).resize(cl_time_rand_dev.get(i).size());
-
- for (size_t j = 0 ; j < yp_mean.get(i).size() ; j++)
- {
- yp_mean.get(i).get(j).resize(2);
- yp_dev.get(i).get(j).resize(2);
-
- yp_mean.get(i).get(j).get(0) = cl_time_hilb_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(0) = cl_time_hilb_dev.get(i).get(j);
-
- yp_mean.get(i).get(j).get(1) = cl_time_rand_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(1) = cl_time_rand_dev.get(i).get(j);
- }
- }
-
- names.add("Hilbert cell list");
- names.add("Random cell list");
-
- for (size_t i = 0 ; i < cl_r_cutoff.size() ; i++)
- gnames.add("Cell-list performance, cut-off radius: " + std::to_string(cl_r_cutoff.get(i)));
-
- std::string y_string = std::string("Time to calculate forces");
- std::string x_string = std::string("Number of particles");
-
- std::string str("<h1>Cell-list " + std::to_string(dim) + "-D performance test: </h1>");
- str += "<h2> 1) Time to calculate forces</h2>";
- cg.addHTML(str);
-
- StandardPerformanceGraph(file_mean,
- file_var,
- file_mean_save,
- file_var_save,
- cg,
- xp,
- yp_mean,
- yp_dev,
- names,
- gnames,
- x_string,
- y_string,
- true);
-}
-
-/*! \brief Output the graph normal cell-list vs Hilbert cell-list (Total time)
- *
- * \tparam dim dimensionality of the test
- *
- * \param cg GoogleChart object
- * \param cl_n_particles number of particles for each test
- * \param cl_r_cutoff cell-list spacing used to construct a cell-list
- * \param cl_time_force_hilb for each particle set, for each cut-off radius, for each order time to calculate the forces
- * \param cl_time_force_rand for each particle set, for each cut-off radius, time to calculate the forces
- *
- */
-template<unsigned int dim> void cl_comp_normal_vs_hilbert_create_time(GoogleChart & cg,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_hilb_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_rand_mean,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_hilb_dev,
- openfpm::vector<openfpm::vector<double>> & cl_time_create_rand_dev,
- double & warning_level,
- double & norm)
-{
- std::string file_mean(test_dir);
- std::string file_var(test_dir);
- file_mean += std::string("/openfpm_pdata/cl_comp_create_norm_hilbert_mean_" + std::to_string(dim) + std::string("_ref"));
- file_var += std::string("/openfpm_pdata/cl_comp_create_norm_hilbert_dev_" + std::to_string(dim) + std::string("_ref"));
-
- std::string file_mean_save = std::string("cl_comp_create_norm_hilbert_mean_" + std::to_string(dim) + std::string("_ref"));
- std::string file_var_save = std::string("cl_comp_create_norm_hilbert_dev_" + std::to_string(dim) + std::string("_ref"));
-
- openfpm::vector<size_t> xp = cl_n_particles;
-
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_mean;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_dev;
-
- openfpm::vector<std::string> names;
- openfpm::vector<std::string> gnames;
-
- yp_mean.resize(cl_time_create_rand_mean.size());
- yp_dev.resize(cl_time_create_rand_dev.size());
- for (size_t i = 0 ; i < yp_mean.size() ; i++)
- {
- yp_mean.get(i).resize(cl_time_create_rand_mean.get(i).size());
- yp_dev.get(i).resize(cl_time_create_rand_dev.get(i).size());
-
- for (size_t j = 0 ; j < yp_mean.get(i).size() ; j++)
- {
- yp_mean.get(i).get(j).resize(2);
- yp_dev.get(i).get(j).resize(2);
-
- yp_mean.get(i).get(j).get(0) = cl_time_create_hilb_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(0) = cl_time_create_hilb_dev.get(i).get(j);
-
- yp_mean.get(i).get(j).get(1) = cl_time_create_rand_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(1) = cl_time_create_rand_dev.get(i).get(j);
- }
- }
-
- names.add("Hilbert cell list");
- names.add("Random cell list");
-
- for (size_t i = 0 ; i < cl_r_cutoff.size() ; i++)
- gnames.add("Cell-list performance, cut-off radius: " + std::to_string(cl_r_cutoff.get(i)));
-
- std::string y_string = std::string("Time to create the cell-list");
- std::string x_string = std::string("Number of particles");
-
- std::string str("<h1>Cell-list " + std::to_string(dim) + "-D performance test: </h1>");
- str += "<h2> 1) Time to create the cell-list</h2>";
- cg.addHTML(str);
-
- StandardPerformanceGraph(file_mean,
- file_var,
- file_mean_save,
- file_var_save,
- cg,
- xp,
- yp_mean,
- yp_dev,
- names,
- gnames,
- x_string,
- y_string,
- true);
-}
-
-
-///////////////////////////////// PARTICLE REORDERING //////////////////////////////////////////////////////
-
-
-
-#endif /* SRC_VECTOR_PERFORMANCE_CL_COMP_PERFORMANCE_GRAPH_HPP_ */
diff --git a/src/Vector/performance/cl_part_performance_graph.hpp b/src/Vector/performance/cl_part_performance_graph.hpp
deleted file mode 100644
index 3104c696a..000000000
--- a/src/Vector/performance/cl_part_performance_graph.hpp
+++ /dev/null
@@ -1,209 +0,0 @@
-/*
- * cl_part_performance_graph.hpp
- *
- * Created on: Dec 23, 2016
- * Author: i-bird
- */
-
-#ifndef SRC_VECTOR_PERFORMANCE_CL_PART_PERFORMANCE_GRAPH_HPP_
-#define SRC_VECTOR_PERFORMANCE_CL_PART_PERFORMANCE_GRAPH_HPP_
-
-#include "vector_dist_performance_util.hpp"
-
-template<unsigned int dim> void cl_part_time(GoogleChart & cg,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> &cl_orders,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_hilb_mean,
- openfpm::vector<openfpm::vector<double>> cl_time_rand_mean,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_hilb_dev,
- openfpm::vector<openfpm::vector<double>> cl_time_rand_dev)
-{
- std::string file_mean(test_dir);
- std::string file_var(test_dir);
- file_mean += std::string("/openfpm_pdata/cl_part_norm_hilbert_mean_" + std::to_string(dim) + std::string("_ref"));
- file_var += std::string("/openfpm_pdata/cl_part_norm_hilbert_dev_" + std::to_string(dim) + std::string("_ref"));
-
- std::string file_mean_save = std::string("cl_part_norm_hilbert_mean_" + std::to_string(dim) + std::to_string("_ref"));
- std::string file_var_save = std::string("cl_part_norm_hilbert_dev_" + std::to_string(dim) + std::to_string("_ref"));
-
- openfpm::vector<size_t> xp = cl_n_particles;
-
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_mean;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_dev;
-
- openfpm::vector<std::string> names;
- openfpm::vector<std::string> gnames;
-
- yp_mean.resize(cl_time_rand_mean.size());
- yp_dev.resize(cl_time_rand_dev.size());
- for (size_t i = 0 ; i < yp_mean.size() ; i++)
- {
- yp_mean.get(i).resize(cl_time_rand_mean.get(i).size());
- yp_dev.get(i).resize(cl_time_rand_dev.get(i).size());
-
- for (size_t j = 0 ; j < yp_mean.get(i).size() ; j++)
- {
- yp_mean.get(i).get(j).resize(1+cl_time_hilb_mean.get(i).get(j).size());
- yp_dev.get(i).get(j).resize(1+cl_time_hilb_dev.get(i).get(j).size());
-
- for (size_t k = 0 ; k < cl_time_hilb_mean.get(i).get(j).size() ; k++)
- {
- yp_mean.get(i).get(j).get(k) = cl_time_hilb_mean.get(i).get(j).get(k);
- yp_dev.get(i).get(j).get(k) = cl_time_hilb_dev.get(i).get(j).get(k);
- }
- yp_mean.get(i).get(j).get(cl_time_hilb_mean.get(i).get(j).size()) = cl_time_rand_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(cl_time_hilb_mean.get(i).get(j).size()) = cl_time_rand_dev.get(i).get(j);
- }
- }
-
- for (size_t i = 0 ; i < cl_orders.size() ; i++)
- {names.add(std::string("Order of: " + std::to_string(cl_orders.get(i))));}
- names.add("No-order");
-
- for (size_t i = 0 ; i < cl_r_cutoff.size() ; i++)
- gnames.add("Cell-list performance, cut-off radius: " + std::to_string(cl_r_cutoff.get(i)));
-
- std::string y_string = std::string("Time to calculate forces (s)");
- std::string x_string = std::string("Number of particles");
-
- std::string str("<h1>Cell-list " + std::to_string(dim) + "-D performance tests: </h1>");
- str += "<h2> 1) Time to calculate forces in the case of particles randomly ordered in a vector of particles, and in the case of particles ordered along an hilbert curve of order N</h2>";
-
- cg.addHTML(str);
-
- StandardPerformanceGraph(file_mean,
- file_var,
- file_mean_save,
- file_var_save,
- cg,
- xp,
- yp_mean,
- yp_dev,
- names,
- gnames,
- x_string,
- y_string,
- false);
-}
-
-template<unsigned int dim> void cl_part_reorder_time(GoogleChart & cg,
- openfpm::vector<size_t> & cl_n_particles,
- openfpm::vector<float> & cl_r_cutoff,
- openfpm::vector<size_t> &cl_orders,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_reorder_mean,
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> cl_time_reorder_dev)
-{
- // Get the test dir
- std::string file_mean(test_dir);
- std::string file_var(test_dir);
- file_mean += std::string("/openfpm_pdata/cl_part_reorder_hilbert_mean_" + std::to_string(dim) + std::string("_ref"));
- file_var += std::string("/openfpm_pdata/cl_part_reorder_hilbert_dev_" + std::to_string(dim) + std::string("_ref"));
-
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> y_ref_mean;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> y_ref_dev;
- y_ref_mean.load(file_mean);
- y_ref_dev.load(file_var);
-
- // warning level
- openfpm::vector<int> warning_vlevel;
-
- // graphs data
- openfpm::vector<size_t> x;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> y;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> y_dev;
- openfpm::vector<std::string> yn;
-
- for (size_t i = 0; i < cl_n_particles.size() ; i++)
- x.add(cl_n_particles.get(i));
-
- for (size_t i = 0; i < cl_orders.size(); i++)
- yn.add("Order of: " + std::to_string(cl_orders.get(i)));
-
- // Add reorder time
- y.resize(cl_time_reorder_mean.size());
- y_dev.resize(cl_time_reorder_dev.size());
- for (size_t r = 0; r < cl_time_reorder_mean.size(); r++)
- {
- y.get(r).resize(cl_time_reorder_mean.get(r).size());
- y_dev.get(r).resize(cl_time_reorder_mean.get(r).size());
- for (size_t k = 0; k < cl_time_reorder_mean.get(r).size(); k++)
- {
- // reorder time
- for (size_t m = 0; m < cl_time_reorder_mean.get(r).get(k).size(); m++)
- {
- // Put time
- y.get(r).get(k).add(cl_time_reorder_mean.get(r).get(k).get(m));
- y_dev.get(r).get(k).add(cl_time_reorder_dev.get(r).get(k).get(m));
- }
- }
- }
-
- // Save y
- y.save("cl_part_reorder_hilbert_mean_" + std::to_string(dim) + std::to_string("_ref"));
- y_dev.save("cl_part_reorder_hilbert_dev_" + std::to_string(dim) + std::to_string("_ref"));
-
- if (y_ref_mean.size() != 0)
- {
- yn.clear();
- y.clear();
-
- size_t i = cl_orders.size()-1;
- yn.add("Order of: " + std::to_string(cl_orders.get(i)));
- yn.add("interval");
- yn.add("interval");
-
- // Add reorder time
- y.resize(cl_time_reorder_mean.size());
- for (size_t r = 0; r < cl_time_reorder_mean.size(); r++)
- {
- int warning_level = -1;
-
- y.get(r).resize(cl_time_reorder_mean.get(r).size());
- for (size_t k = 0; k < cl_time_reorder_mean.get(r).size(); k++)
- {
- // reorder time
- size_t m = cl_orders.size()-1;
-
- // Put time
- y.get(r).get(k).add(cl_time_reorder_mean.get(r).get(k).get(m));
- y.get(r).get(k).add(y_ref_mean.get(r).get(k).get(m) - 3.0*y_ref_dev.get(r).get(k).get(m) );
- y.get(r).get(k).add(y_ref_mean.get(r).get(k).get(m) + 3.0*y_ref_dev.get(r).get(k).get(m) );
-
- warning_set(warning_level,cl_time_reorder_mean.get(r).get(k).get(m),y_ref_mean.get(r).get(k).get(m),y_ref_dev.get(r).get(k).get(m));
- }
-
- warning_vlevel.add(warning_level);
- }
- }
-
- // Speedup graphs report
-
- // Google charts options
- GCoptions options;
-
- options.yAxis = std::string("Time (s)");
- options.xAxis = std::string("Number of particles");
- options.lineWidth = 2;
- options.more = GC_ZOOM;
-
- //options.more = "hAxis: {logScale: true}";
-
- std::string str("<h1>Cell-list " + std::to_string(dim) + "-D performance tests: </h1>");
- str += "<h2> 1) Time to reorder the distributed vector</h2>";
-
- cg.addHTML(str);
-
- for (size_t i = 0; i < cl_r_cutoff.size(); i++)
- {
- std::string chart_area;
- if (warning_vlevel.size() != 0)
- addchartarea(chart_area,warning_vlevel.get(i));
- options.more = GC_Y_LOG + "," + GC_ZOOM + chart_area;
-
- options.title = std::string("Cell-list performance, cut-off radius: " + std::to_string(cl_r_cutoff.get(i)));
- cg.AddLinesGraph(x,y.get(i),yn,options);
- }
-}
-
-#endif /* SRC_VECTOR_PERFORMANCE_CL_PART_PERFORMANCE_GRAPH_HPP_ */
diff --git a/src/Vector/performance/verlet_performance_tests.hpp b/src/Vector/performance/verlet_performance_tests.hpp
index f955031c7..d05562684 100644
--- a/src/Vector/performance/verlet_performance_tests.hpp
+++ b/src/Vector/performance/verlet_performance_tests.hpp
@@ -10,6 +10,14 @@
#include "util/stat/common_statistics.hpp"
+// Property tree
+struct report_verlet_tests
+{
+ boost::property_tree::ptree graphs;
+};
+
+report_verlet_tests report_vl;
+
/*! \brief Print a string about the test
*
* \param test string to print
@@ -22,7 +30,7 @@ void print_test_v(std::string test, size_t sz)
std::cout << test << " " << sz << "\n";
}
-BOOST_AUTO_TEST_SUITE( verletlist_part_reorder_performance_test )
+BOOST_AUTO_TEST_SUITE( verletlist_performance_test )
///////////////////// INPUT DATA //////////////////////
@@ -39,17 +47,6 @@ size_t k_min = 15000;
// Numbers of particles vector
openfpm::vector<size_t> n_particles;
-// Vectors to store the data for 2D
-openfpm::vector<openfpm::vector<double>> time_force_mean;
-openfpm::vector<openfpm::vector<double>> time_force_dev;
-openfpm::vector<openfpm::vector<double>> time_create_mean;
-openfpm::vector<openfpm::vector<double>> time_create_dev;
-
-// Vectors to store the data for 3D
-openfpm::vector<openfpm::vector<double>> time_force_mean_2;
-openfpm::vector<openfpm::vector<double>> time_force_dev_2;
-openfpm::vector<openfpm::vector<double>> time_create_mean_2;
-openfpm::vector<openfpm::vector<double>> time_create_dev_2;
/*! \brief Function for verlet test without an Hilbert curve reordering (unordered positioning)
*
@@ -57,17 +54,8 @@ openfpm::vector<openfpm::vector<double>> time_create_dev_2;
template<unsigned int dim> void vd_verlet_random_benchmark(size_t k_start,
size_t k_min,
openfpm::vector<float> & r_cutoff,
- openfpm::vector<size_t> & n_particles,
- openfpm::vector<openfpm::vector<double>> & time_force_mean,
- openfpm::vector<openfpm::vector<double>> & time_create_mean,
- openfpm::vector<openfpm::vector<double>> & time_force_dev,
- openfpm::vector<openfpm::vector<double>> & time_create_dev)
+ openfpm::vector<size_t> & n_particles)
{
- time_force_mean.resize(r_cutoff.size());
- time_create_mean.resize(r_cutoff.size());
- time_force_dev.resize(r_cutoff.size());
- time_create_dev.resize(r_cutoff.size());
-
std::string str("Testing " + std::to_string(dim) + "D vector no-order, Verlet-list");
print_test_v(str,0);
@@ -80,16 +68,23 @@ template<unsigned int dim> void vd_verlet_random_benchmark(size_t k_start,
//Cut-off radius
float r_cut = r_cutoff.get(r);
+ report_vl.graphs.put("performance.verletlist.getVerletList" + std::to_string(dim) + "D(" + std::to_string(r) + ").rcut",r_cut);
+
//Number of particles
size_t k = k_start * v_cl.getProcessingUnits();
//Counter number for amounts of particles
size_t k_count = 1 + log2(k/k_min);
+ int c = 0;
+
for (size_t k_int = k ; k_int >= k_min ; k_int/=2 )
{
BOOST_TEST_CHECKPOINT( "Testing " << dim << "D vector without an Hilbert curve reordering k=" << k_int );
+ report_vl.graphs.put("performance.verletlist.getVerletList" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+ report_vl.graphs.put("performance.verletlist.calc_forces" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").n",k_int);
+
if (n_particles.size() < k_count)
n_particles.add(k_int);
@@ -119,12 +114,11 @@ template<unsigned int dim> void vd_verlet_random_benchmark(size_t k_start,
double sum_verlet_mean = 0;
double sum_verlet_dev = 0;
for (size_t n = 0 ; n < N_STAT_TEST; n++)
- measures.add(benchmark_get_verlet(vd,r_cut));
+ {measures.add(benchmark_get_verlet(vd,r_cut));}
standard_deviation(measures,sum_verlet_mean,sum_verlet_dev);
- //Average total time
- time_create_mean.get(r).add(sum_verlet_mean);
- time_create_dev.get(r).add(sum_verlet_dev);
+ report_vl.graphs.put("performance.verletlist.getVerletList" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_verlet_mean);
+ report_vl.graphs.put("performance.verletlist.getVerletList" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_verlet_dev);
//Calculate forces
@@ -134,276 +128,99 @@ template<unsigned int dim> void vd_verlet_random_benchmark(size_t k_start,
measures.clear();
for (size_t l = 0 ; l < N_STAT_TEST ; l++)
- measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));
+ {measures.add(benchmark_calc_forces<dim>(NN,vd,r_cut));}
standard_deviation(measures,sum_fr_mean,sum_fr_dev);
- time_force_mean.get(r).add(sum_fr_mean);
- time_force_dev.get(r).add(sum_fr_dev);
+
+ report_vl.graphs.put("performance.verletlist.calc_forces" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").mean",sum_fr_mean);
+ report_vl.graphs.put("performance.verletlist.calc_forces" + std::to_string(dim) + "D(" + std::to_string(r) + ").npart(" + std::to_string(c) + ").dev",sum_fr_dev);
if (v_cl.getProcessUnitID() == 0)
- std::cout << "Particles: " << k_int << "," << "cut-off: " << r_cut << " time to construct a Verlet list = " << sum_verlet_mean << " dev: " << sum_verlet_dev << " calculate force = " << sum_fr_mean << " dev: " << sum_fr_dev << std::endl;
+ {std::cout << "Particles: " << k_int << "," << "cut-off: " << r_cut << " time to construct a Verlet list = " << sum_verlet_mean << " dev: " << sum_verlet_dev << " calculate force = " << sum_fr_mean << " dev: " << sum_fr_dev << std::endl;}
+
+ c++;
}
}
}
}
-/*! \brief Function for verlet test with an Hilbert curve reordering
- *
- */
-template<unsigned int dim> void vd_verlet_hilbert_benchmark(size_t k_start, size_t k_min, double ghost_part,openfpm::vector<float> & r_cutoff, openfpm::vector<size_t> & n_particles, openfpm::vector<size_t> &orders, openfpm::vector<openfpm::vector<openfpm::vector<double>>> &time_hilb, openfpm::vector<openfpm::vector<openfpm::vector<double>>> &time_total_hilb)
+
+BOOST_AUTO_TEST_CASE( vector_dist_verlet_test )
{
- time_hilb.resize(r_cutoff.size());
- for (size_t r = 0; r < time_hilb.size(); r++)
- {
- time_hilb.get(r).resize(n_particles.size());
- for (size_t k = 0; k < time_hilb.get(r).size(); k++)
- {
- time_hilb.get(r).get(k).resize(orders.size());
- }
- }
+ //Benchmark test for 2D and 3D
+ vd_verlet_random_benchmark<3>(k_start,k_min,r_cutoff,n_particles);
+ vd_verlet_random_benchmark<2>(k_start,k_min,r_cutoff,n_particles);
+}
- time_total_hilb.resize(r_cutoff.size());
- for (size_t r = 0; r < time_total_hilb.size(); r++)
+BOOST_AUTO_TEST_CASE(vector_dist_verlet_performance_write_report)
+{
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
{
- time_total_hilb.get(r).resize(n_particles.size());
- for (size_t k = 0; k < time_total_hilb.get(r).size(); k++)
- {
- time_total_hilb.get(r).get(k).resize(orders.size());
- }
+ report_vl.graphs.put("graphs.graph(" + std::to_string(r) + ").type","line");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").title","getVerletList 3D performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").x.title","number of particles");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").y.title","Time seconds");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(0).source","performance.verletlist.getVerletList3D(" + std::to_string(r) + ").npart(#).mean");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").x.data(0).source","performance.verletlist.getVerletList3D(" + std::to_string(r) + ").npart(#).n");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").y.data(0).title","Verlet-list");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r) + ").options.log_y","true");
}
- std::string str("Testing " + std::to_string(dim) + "D vector, Hilbert curve reordering, Verlet-list");
- print_test_v(str,0);
-
- // For different r_cut
+ //For different r_cut
for (size_t r = 0; r < r_cutoff.size(); r++ )
{
- Vcluster<> & v_cl = create_vcluster();
-
- //Cut-off radius
- float r_cut = r_cutoff.get(r);
-
- // Number of particles
- size_t k = k_start * v_cl.getProcessingUnits();
-
- //For different curve orders
- for ( size_t i = 0; i < orders.size(); i++)
- {
- size_t m = orders.get(i);
- size_t part = 0;
-
- for (size_t k_int = k ; k_int >= k_min ; k_int/=2, part++ )
- {
- BOOST_TEST_CHECKPOINT( "Testing " << dim << "D vector with an Hilbert curve reordering k=" << k_int );
-
- Box<dim,float> box;
-
- for (size_t i = 0; i < dim; i++)
- {
- box.setLow(i,0.0);
- box.setHigh(i,1.0);
- }
-
- // Boundary conditions
- size_t bc[dim];
-
- for (size_t i = 0; i < dim; i++)
- bc[i] = PERIODIC;
-
- vector_dist<dim,float, aggregate<float[dim]>, CartDecomposition<dim,float> > vd(k_int,box,bc,Ghost<dim,float>(ghost_part));
-
- // Initialize a dist vector
- vd_initialize<dim>(vd, v_cl, k_int);
-
- vd.template ghost_get<0>();
-
- //Reorder a vector
-
- double sum_reorder = 0;
- for (size_t h = 0 ; h < N_VERLET_TEST; h++)
- sum_reorder += benchmark_reorder(vd,m);
- sum_reorder /= N_VERLET_TEST;
-
- //Get verlet list
-
- double sum_verlet = 0;
-
- for (size_t n = 0 ; n < N_VERLET_TEST; n++)
- sum_verlet += benchmark_get_verlet(vd,r_cut);
- sum_verlet /= N_VERLET_TEST;
- //Average total time
- time_total_hilb.get(r).get(part).get(i) = sum_verlet;
-
- //Calculate forces
-
- auto NN = vd.getCellList(r_cut);
- double sum_forces = 0;
-
- for (size_t l = 0 ; l < N_VERLET_TEST; l++)
- sum_forces += benchmark_calc_forces<dim>(NN,vd,r_cut);
- sum_forces /= N_VERLET_TEST;
- time_hilb.get(r).get(part).get(i) = sum_forces;
-
- if (v_cl.getProcessUnitID() == 0)
- std::cout << "Order = " << m << ", Cut-off = " << r_cut << ", Particles = " << k_int << ". Time to reorder: " << sum_reorder << " time to get the verlet-list: " << sum_verlet << " time to calculate forces: " << sum_forces << std::endl;
- }
- }
+ report_vl.graphs.put("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").type","line");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").title","calc_force 3D performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").x.title","number of particles");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.title","Time seconds");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.data(0).source","performance.verletlist.calc_forces3D(" + std::to_string(r) + ").npart(#).mean");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").x.data(0).source","performance.verletlist.calc_forces3D(" + std::to_string(r) + ").npart(#).n");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").y.data(0).title","Verlet-list");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(r_cutoff.size() + r) + ").options.log_y","true");
}
-}
-
-/*! \brief Function for verlet performance report
- *
- */
-template<unsigned int dim> void vd_verlet_performance_write_report(GoogleChart & cg,
- openfpm::vector<float> & r_cutoff,
- openfpm::vector<size_t> & n_particles,
- openfpm::vector<openfpm::vector<double>> time_force_mean,
- openfpm::vector<openfpm::vector<double>> time_force_dev,
- openfpm::vector<openfpm::vector<double>> time_create_mean,
- openfpm::vector<openfpm::vector<double>> time_create_dev)
-{
- {
- std::string file_mean(test_dir);
- std::string file_var(test_dir);
- file_mean += std::string("/openfpm_pdata/verlet_comp_force_mean_" + std::to_string(dim) + std::string("_ref"));
- file_var += std::string("/openfpm_pdata/verlet_comp_force_dev_" + std::to_string(dim) + std::string("_ref"));
-
- std::string file_mean_save = std::string("verlet_comp_force_mean_" + std::to_string(dim) + std::to_string("_ref"));
- std::string file_var_save = std::string("verlet_comp_force_dev_" + std::to_string(dim) + std::to_string("_ref"));
-
- openfpm::vector<size_t> xp = n_particles;
-
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_mean;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_dev;
-
- openfpm::vector<std::string> names;
- openfpm::vector<std::string> gnames;
-
- yp_mean.resize(time_force_mean.size());
- yp_dev.resize(time_force_dev.size());
- for (size_t i = 0 ; i < yp_mean.size() ; i++)
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
{
- yp_mean.get(i).resize(time_force_mean.get(i).size());
- yp_dev.get(i).resize(time_force_dev.get(i).size());
-
- for (size_t j = 0 ; j < yp_mean.get(i).size() ; j++)
- {
- yp_mean.get(i).get(j).resize(1);
- yp_dev.get(i).get(j).resize(1);
-
- yp_mean.get(i).get(j).get(0) = time_force_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(0) = time_force_dev.get(i).get(j);
- }
- }
-
- names.add("Force verlet");
-
- for (size_t i = 0 ; i < r_cutoff.size() ; i++)
- gnames.add("Verlet-list performance, cut-off radius: " + std::to_string(r_cutoff.get(i)));
-
- std::string y_string = std::string("Time to calculate forces (s)");
- std::string x_string = std::string("Number of particles");
-
- std::string str("<h1>Verlet-list " + std::to_string(dim) + "-D performance test force calculation: </h1>");
- cg.addHTML(str);
-
- StandardPerformanceGraph(file_mean,
- file_var,
- file_mean_save,
- file_var_save,
- cg,
- xp,
- yp_mean,
- yp_dev,
- names,
- gnames,
- x_string,
- y_string,
- true);
+ report_vl.graphs.put("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").type","line");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").title","getVerletList 2D performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").x.title","number of particles");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.title","Time seconds");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.data(0).source","performance.verletlist.getVerletList2D(" + std::to_string(r) + ").npart(#).mean");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").x.data(0).source","performance.verletlist.getVerletList2D(" + std::to_string(r) + ").npart(#).n");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").y.data(0).title","Verlet-list");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(2*r_cutoff.size() + r) + ").options.log_y","true");
}
- //////////////////// TIME TO CREATE //////////////////////////
-
- {
- std::string file_mean(test_dir);
- std::string file_var(test_dir);
- file_mean += std::string("/openfpm_pdata/verlet_comp_create_mean_" + std::to_string(dim) + std::string("_ref"));
- file_var += std::string("/openfpm_pdata/verlet_comp_create_dev_" + std::to_string(dim) + std::string("_ref"));
-
- std::string file_mean_save = std::string("verlet_comp_create_mean_" + std::to_string(dim) + std::to_string("_ref"));
- std::string file_var_save = std::string("verlet_comp_create_dev_" + std::to_string(dim) + std::to_string("_ref"));
- openfpm::vector<size_t> xp = n_particles;
-
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_mean;
- openfpm::vector<openfpm::vector<openfpm::vector<double>>> yp_dev;
-
- openfpm::vector<std::string> names;
- openfpm::vector<std::string> gnames;
-
- yp_mean.resize(time_create_mean.size());
- yp_dev.resize(time_create_dev.size());
- for (size_t i = 0 ; i < yp_mean.size() ; i++)
+ //For different r_cut
+ for (size_t r = 0; r < r_cutoff.size(); r++ )
{
- yp_mean.get(i).resize(time_create_mean.get(i).size());
- yp_dev.get(i).resize(time_create_dev.get(i).size());
-
- for (size_t j = 0 ; j < yp_mean.get(i).size() ; j++)
- {
- yp_mean.get(i).get(j).resize(1);
- yp_dev.get(i).get(j).resize(1);
-
- yp_mean.get(i).get(j).get(0) = time_create_mean.get(i).get(j);
- yp_dev.get(i).get(j).get(0) = time_create_dev.get(i).get(j);
- }
+ report_vl.graphs.put("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").type","line");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").title","calc_force 2D performance r_cut=" + std::to_string(r_cutoff.get(r)));
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").x.title","number of particles");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.title","Time seconds");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.data(0).source","performance.verletlist.calc_forces2D(" + std::to_string(r) + ").npart(#).mean");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").x.data(0).source","performance.verletlist.calc_forces2D(" + std::to_string(r) + ").npart(#).n");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").y.data(0).title","Verlet-list");
+ report_vl.graphs.add("graphs.graph(" + std::to_string(3*r_cutoff.size() + r) + ").options.log_y","true");
}
- names.add("Create verlet");
-
- for (size_t i = 0 ; i < r_cutoff.size() ; i++)
- gnames.add("Verlet-list performance, cut-off radius: " + std::to_string(r_cutoff.get(i)));
-
- std::string y_string = std::string("Time to construct a verlet-list (s)");
- std::string x_string = std::string("Number of particles");
-
- std::string str("<h1>Verlet-list " + std::to_string(dim) + "-D performance test force calculation: </h1>");
- cg.addHTML(str);
-
- StandardPerformanceGraph(file_mean,
- file_var,
- file_mean_save,
- file_var_save,
- cg,
- xp,
- yp_mean,
- yp_dev,
- names,
- gnames,
- x_string,
- y_string,
- true);
- }
-}
+ if (create_vcluster().rank() == 0)
+ {
+ boost::property_tree::xml_writer_settings<std::string> settings(' ', 4);
+ boost::property_tree::write_xml("verletlist_performance.xml", report_vl.graphs,std::locale(),settings);
-BOOST_AUTO_TEST_CASE( vector_dist_verlet_test )
-{
- //Benchmark test for 2D and 3D
- vd_verlet_random_benchmark<3>(k_start,k_min,r_cutoff,n_particles,time_force_mean,time_create_mean,time_force_dev,time_create_dev);
- vd_verlet_random_benchmark<2>(k_start,k_min,r_cutoff,n_particles,time_force_mean_2,time_create_mean_2,time_force_dev_2,time_create_dev_2);
-}
+ std::string file_xml_ref(test_dir);
+ file_xml_ref += std::string("/openfpm_pdata/verletlist_performance_ref.xml");
-BOOST_AUTO_TEST_CASE(vector_dist_verlet_performance_write_report)
-{
- GoogleChart cg;
+ GoogleChart cg;
- //Write report for 2D and 3D
- vd_verlet_performance_write_report<3>(cg,r_cutoff,n_particles,time_force_mean,time_force_dev,time_create_mean,time_create_dev);
- vd_verlet_performance_write_report<2>(cg,r_cutoff,n_particles,time_force_mean_2,time_force_dev_2,time_create_mean_2,time_create_dev_2);
+ StandardXMLPerformanceGraph("verletlist_performance.xml",file_xml_ref,cg);
- if (create_vcluster().getProcessUnitID() == 0)
- {
- addUpdtateTime(cg);
+ addUpdtateTime(cg,create_vcluster().size());
- cg.write("Verletlist_comp.html");
+ if (create_vcluster().getProcessUnitID() == 0)
+ {cg.write("verletlist_performance.html");}
}
}
--
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