From 27a91f2684e7af8f124cdc4af0d1421b194262f5 Mon Sep 17 00:00:00 2001
From: Pietro Incardona <i-bird@private-incardon-3.mpi-cbg.de>
Date: Thu, 9 Jun 2016 17:48:02 +0200
Subject: [PATCH] Fixing installation
---
example/Vector/2_molecular_dynamic/main.cpp | 7 +++++--
script/install_PETSC.sh | 4 +++-
2 files changed, 8 insertions(+), 3 deletions(-)
diff --git a/example/Vector/2_molecular_dynamic/main.cpp b/example/Vector/2_molecular_dynamic/main.cpp
index d07b0ffd3..b8ae1efe0 100644
--- a/example/Vector/2_molecular_dynamic/main.cpp
+++ b/example/Vector/2_molecular_dynamic/main.cpp
@@ -335,13 +335,16 @@ int main(int argc, char* argv[])
}
if (i % 100 == 0)
- {
- vd.write("particles",f);
+ {
+ vd.deleteGhost();
+ vd.write("particles_",f);
double energy = calc_energy(vd,NN,L);
auto & vcl = create_vcluster();
vcl.sum(energy);
vcl.execute();
+ vd.ghost_get<>();
+
x.add(i);
y.add({energy});
if (vcl.getProcessUnitID() == 0)
diff --git a/script/install_PETSC.sh b/script/install_PETSC.sh
index 4c1b8e071..cbc08d16f 100755
--- a/script/install_PETSC.sh
+++ b/script/install_PETSC.sh
@@ -103,8 +103,10 @@ if [ ! -d "$1/TRILINOS" ]; then
cd build
### On clang we have no openMP
+ petsc_openmp=""
if [ x"$dgc_compiler" == x"clang++" ]; then
conf_trl_openmp="-D Trilinos_ENABLE_OpenMP=OFF"
+ petsc_openmp="--with-openmp=yes"
else
conf_trl_openmp="-D Trilinos_ENABLE_OpenMP=ON"
fi
@@ -286,7 +288,7 @@ cd petsc-3.6.4
echo "./configure --with-cxx-dialect=C++11 --with-mpi-dir=$1/MPI $configure_options --prefix=$1/PETSC"
-./configure --with-cxx-dialect=C++11 --with-openmp=yes --with-mpi-dir=$1/MPI $configure_options --with-mumps-lib="$MUMPS_extra_lib" --prefix=$1/PETSC
+./configure --with-cxx-dialect=C++11 $petsc_openmp --with-mpi-dir=$1/MPI $configure_options --with-mumps-lib="$MUMPS_extra_lib" --prefix=$1/PETSC
make all test
make install
--
GitLab