From 980af42c5ba8378b5f2c2ad304ff5bd5722a51b0 Mon Sep 17 00:00:00 2001
From: Pietro Incardona <i-bird@localhost.localdomain>
Date: Mon, 8 Feb 2016 03:39:01 -0500
Subject: [PATCH] Working H5Part installation
---
configure.ac | 20 +++++++--
install | 95 ++++++++++++++++++++++++++----------------
script/detect_fortran | 2 -
script/install_HDF5.sh | 0
script/pre_req | 1 -
5 files changed, 77 insertions(+), 41 deletions(-)
mode change 100644 => 100755 script/install_HDF5.sh
diff --git a/configure.ac b/configure.ac
index 352f29055..42dc743c6 100755
--- a/configure.ac
+++ b/configure.ac
@@ -38,7 +38,7 @@ m4_ifdef([AX_LAPACK],,[m4_include([m4/ax_lapack.m4])])
m4_ifdef([AX_SUITESPARSE],,[m4_include([m4/ax_suitesparse.m4])])
m4_ifdef([AX_EIGEN],,[m4_include([m4/ax_eigen.m4])])
m4_ifdef([AX_LIB_HDF5],,[m4_include([m4/ax_lib_hdf5.m4])]])
-
+m4_ifdef([AX_H5HUT],,[m4_include([m4/ax_h5hut.m4])])
CXXFLAGS+=" --std=c++11 "
NVCCFLAGS=" "
@@ -105,8 +105,22 @@ IMMDX_LIB_METIS([],[echo "Cannot detect metis, use the --with-metis option if it
## Check for HDF5
-AX_LIB_HDF5([],[echo "Cannot detect hdf5, use the --with-hdf5 option if it is not installed in the default location"
- exit 206])
+AX_LIB_HDF5([parallel])
+
+if test x"$with_hdf5" = x"no"; then
+ echo "Cannot detect hdf5, use the --with-hdf5 option if it is not installed in the default location"
+ exit 207
+fi
+
+#########
+
+## Check for H5HUT
+
+save_CC=$CC
+CC=$CXX
+AX_H5HUT([],[echo "Cannot detect h5hut, use the --with-h5hut option if it is not installed in the default location"
+ exit 208])
+CC=$save_CC
########
diff --git a/install b/install
index f26e6d20a..b3eebd1e3 100755
--- a/install
+++ b/install
@@ -1,36 +1,36 @@
-#! /bin/bash
-
-source script/help
-source script/discover_os
-source script/show_solutions
-source script/pre_req
-source script/remove_old
-
-##
-
-install_req=1
-i_dir=" "
-sq=0
-
-while getopts :di:shc: FLAG; do
- case $FLAG in
- d)
- echo "Disable depencencies installation"
- install_req=0
- ;;
- i)
- echo "Setting dependencies installation dir: $OPTARG"
- i_dir=$OPTARG
- ;;
- s)
- echo "Skipping user cin"
- sq=1
- ;;
- c)
- echo "Fowarding options $OPTARG to configure script"
- configure_options=$OPTARG
- ;;
- h) #show help
+ #! /bin/bash
+
+ source script/help
+ source script/discover_os
+ source script/show_solutions
+ source script/pre_req
+ source script/remove_old
+
+ ##
+
+ install_req=1
+ i_dir=" "
+ sq=0
+
+ while getopts :di:shc: FLAG; do
+ case $FLAG in
+ d)
+ echo "Disable depencencies installation"
+ install_req=0
+ ;;
+ i)
+ echo "Setting dependencies installation dir: $OPTARG"
+ i_dir=$OPTARG
+ ;;
+ s)
+ echo "Skipping user cin"
+ sq=1
+ ;;
+ c)
+ echo "Fowarding options $OPTARG to configure script"
+ configure_options=$OPTARG
+ ;;
+ h) #show help
HELP
;;
\?) #unrecognized option - are fowarded to configure
@@ -138,6 +138,7 @@ LAPACK_installed=0
SUITESPARSE_installed=0
EIGEN_installed=0
HDF5_installed=0
+H5HUT_installed=0
blas_options=""
conf_err=1
@@ -217,11 +218,21 @@ else
elif [ $conf_err -eq 207 ]; then
echo "HDF5 not found try to install"
if [ $HDF5_installed -eq 1 ]; then
- echo "Error the installation of HDF5 failed"
+ echo "Error the installation of HDF5 failed"
+ exit 1
fi
./script/install_HDF5.sh $i_dir $compiler_opt
- configure_options=" $configure_options --with-hdf5=$i_dir/HDF5 "
+ configure_options=" $configure_options --with-hdf5=$i_dir/HDF5/bin/h5pcc "
HDF5_installed=1
+ elif [ $conf_err -eq 208 ]; then
+ echo "H5HUT not found try to install"
+ if [ $H5HUT_installed -eq 1 ]; then
+ echo "Error the installation of H5HUT failed"
+ exit 1
+ fi
+ ./script/install_H5HUT.sh $i_dir $compiler_opt
+ configure_options=" $configure_options --with-h5hut=$i_dir/H5HUT/ "
+ H5HUT_installed=1
elif [ $conf_err -ne 0 ]; then
echo "I do not know how to recover from this error"
exit 1
@@ -320,6 +331,20 @@ if [ $SUITESPARSE_installed -eq 1 ]; then
echo -e "\033[1m export DYLD_LIBRARY_PATH=\"\$DYLD_LIBRARY_PATH:$i_dir/SUITESPARSE/lib\" \033[0m"
fi
fi
+if [ $EIGEN_installed -eq 1 ]; then
+ echo ""
+ echo -e "\033[1;34;5m --------------------------------------- \033[0m"
+ echo -e "\033[1;34;5m --------------- EIGEN ----------------- \033[0m"
+ echo -e " EIGEN has been installed into: \033[1m $i_dir/EIGEN \033[0m"
+ echo ""
+fi
+if [ $HDF5_installed -eq 1 ]; then
+ echo ""
+ echo -e "\033[1;34;5m --------------------------------------- \033[0m"
+ echo -e "\033[1;34;5m ---------------- HDF5 ----------------- \033[0m"
+ echo -e " HDF5 has been installed into: \033[1m $i_dir/HDF5 \033[0m"
+ echo ""
+fi
echo ""
echo ""
if [ $conf_err -ne 0 ]; then
diff --git a/script/detect_fortran b/script/detect_fortran
index 9508e2399..af29a20e6 100755
--- a/script/detect_fortran
+++ b/script/detect_fortran
@@ -8,8 +8,6 @@ function detect_fortran()
return
fi
- echo -e "$1 \033[92;1m SUCCESS \033[0m"
-
dgc_ret=1
}
diff --git a/script/install_HDF5.sh b/script/install_HDF5.sh
old mode 100644
new mode 100755
diff --git a/script/pre_req b/script/pre_req
index 6890a9ce9..c7d808607 100755
--- a/script/pre_req
+++ b/script/pre_req
@@ -13,7 +13,6 @@ source script/solve_wget
source script/solve_automake
source script/solve_brew
source script/solve_libtool
-source script/solve_fortran
source script/detect_gcc
source script/detect_osx
source script/show_solutions
--
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