#! /bin/bash # Make a directory in /tmp/OpenFPM_data echo "Directory: $1" echo "Machine: $2" mkdir /tmp/openfpm_pdata mv * .[^.]* /tmp/openfpm_pdata mv /tmp/openfpm_pdata OpenFPM_pdata mkdir OpenFPM_pdata/src/config git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_vcluster.git OpenFPM_vcluster git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_devices.git OpenFPM_devices git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_data.git OpenFPM_data git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_io.git OpenFPM_IO cd OpenFPM_data git checkout develop cd .. cd "$1/OpenFPM_pdata" if [ "$2" == "gin" ] then echo "Compiling on gin\n" source ~/.bashrc sh ./autogen.sh module load gcc/4.9.2 ./install make if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 2 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 3 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 4 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 5 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 6 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 7 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 8 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 9 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 10 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 11 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 12 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi elif [ "$2" == "wetcluster" ] then echo "Compiling on wetcluster" ## produce the module path module load gcc/4.9.2 module load openmpi/1.8.1 module load boost/1.54.0 sh ./autogen.sh ./install --with-boost=/sw/apps/boost/1.54.0/ CXX=mpic++ make if [ $? -ne 0 ]; then exit 1 ## Run on the cluster bsub -o output_run2.%J -K -n 2 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 2 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run3.%J -K -n 3 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 3 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run4.%J -K -n 4 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 4 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run5.%J -K -n 5 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 5 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run6.%J -K -n 6 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 6 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run7.%J -K -n 7 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 7 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run8.%J -K -n 8 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 8 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run9.%J -K -n 9 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 9 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run10.%J -K -n 10 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 10 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run11.%J -K -n 11 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 11 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run12.%J -K -n 12 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 12 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 32 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 64 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 128 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi elif [ "$2" == "taurus" ] then echo "Compiling on taurus" echo "$PATH" module load gcc/4.8.2 module load boost/1.55.0-gnu4.8 module load openmpi/1.8.7 module unload bullxmpi sh ./autogen.sh sh ./configure --enable-verbose CXX=mpic++ make if [ $? -ne 0 ]; then exit 1 ; fi # salloc --nodes=1 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 16 src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # salloc --nodes=2 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 32 src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # salloc --nodes=4 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 64 src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # salloc --nodes=8 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 128 src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # salloc --nodes=16 --ntasks-per-node=16 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 256 src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi else echo "Compiling general" source ~/.bashrc sh ./autogen.sh ./install mpirun -np 2 ./src/pdata mpirun -np 3 ./src/pdata mpirun -np 4 ./src/pdata fi