#! /bin/bash # Make a directory in /tmp/OpenFPM_data echo "Directory: $1" echo "Machine: $2" mkdir /tmp/openfpm_vcluster mv * .[^.]* /tmp/openfpm_vcluster mv /tmp/openfpm_vcluster OpenFPM_vcluster mkdir OpenFPM_vcluster/src/config git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_devices.git OpenFPM_devices git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_data.git OpenFPM_data cd OpenFPM_data git checkout develop cd .. cd "$1/OpenFPM_vcluster" if [ "$2" == "gin" ] then echo "Compiling on gin\n" module load gcc/4.9.2 module load openmpi/1.8.1 elif [ "$2" == "wetcluster" ] then echo "Compiling on wetcluster" ## produce the module path export MODULEPATH="/sw/apps/modules/modulefiles:$MODULEPATH" script="module load gcc/4.9.2\n module load openmpi/1.8.1\n module load boost/1.54.0\n compile_options='--with-boost=/sw/apps/boost/1.54.0/'\n \n sh ./autogen.sh\n sh ./configure \"\$compile_options\" CXX=mpic++\n make\n if [ \"\$?\" = "0" ]; then exit 1 ; fi\n exit(0)\n" echo $script | sed -r 's/\\n/\n/g' > compile_script bsub -o output_compile.%J -K -n 1 -J compile sh ./compile_script ## Run on the cluster bsub -o output_run2.%J -K -n 2 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 2 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run4.%J -K -n 4 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 4 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run8.%J -K -n 8 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 8 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run12.%J -K -n 12 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 12 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 32 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 64 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 128 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi elif [ "$2" == "taurus" ] then echo "Compiling on taurus" echo "$PATH" module load gcc/4.8.2 module load boost/1.55.0-gnu4.8 module unload bullxmpi source ~/.bashrc sh ./autogen.sh sh ./configure --enable-verbose CXX=mpic++ make if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=1 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=sandy mpirun -np 16 src/vcluster if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=2 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=sandy mpirun -np 32 src/vcluster if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=4 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=sandy mpirun -np 64 src/vcluster if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=8 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=sandy mpirun -np 128 src/vcluster if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=16 --ntasks-per-node=16 --time=00:5:00 --mem-per-cpu=1900 --partition=sandy mpirun -np 256 src/vcluster if [ $? -ne 0 ]; then exit 1 ; fi else echo "Compiling general" sh ./autogen.sh sh ./configure CXX=mpic++ make mpirun -np 2 ./src/vcluster mpirun -np 4 ./src/vcluster fi