adjusted default paramters to more conservative

processing/mc2FromMDOC.py

@@ -42,7 +42,7 @@ parser.add_argument('-v', '--verbose', action='store_true', help='Allow verbose
 parser.add_argument('-nl', '--noLog', action='store_true', help='Allow verbose output from motioncor2 during script run.')
 parser.add_argument('-kf', '--keepFrames', action='store_true', help='Keep temporary individual aligned frames.')
 parser.add_argument('-psf', '--pixelSizeFactor', nargs='?', type=float, default=1, help='Correction factor for pixel size, set to 0.5 for super resolution with binned mdoc.')
-parser.add_argument('-g', '--group', nargs='?', type=int, default=2, help='Group parameter to motioncor2. Default 2, set to 3-4 on very low signal input.')
+parser.add_argument('-g', '--group', nargs='?', type=int, default=1, help='Group parameter to motioncor2. Default 1, set to 2-3 on very low signal input.')
 #parser.add_argument('-g', '--group', nargs='?', type=int, default=1, help='Group parameter to motioncor2. Default 1, set to 2 or 3 on very low signal input.')
 
 # parser.add_argument('-c', '--cutoff', nargs='?', type=float, default='1', help='The threshold of how many standard deviations above or below the a line must deviate before it is corrected')