parser.add_argument('-psf','--pixelSizeFactor',nargs='?',type=float,default=1,help='Correction factor for pixel size, set to 0.5 for super resolution with binned mdoc.')
parser.add_argument('-psf','--pixelSizeFactor',nargs='?',type=float,default=1,help='Correction factor for pixel size, set to 0.5 for super resolution with binned mdoc.')
parser.add_argument('-g','--group',nargs='?',type=int,default=1,help='Group parameter to motioncor2. Default 1, set to 2 or 3 on very low signal input.')
#parser.add_argument('-g', '--group', nargs='?', type=int, default=1, help='Group parameter to motioncor2. Default 1, set to 2 or 3 on very low signal input.')
# parser.add_argument('-c', '--cutoff', nargs='?', type=float, default='1', help='The threshold of how many standard deviations above or below the a line must deviate before it is corrected')
# parser.add_argument('-c', '--cutoff', nargs='?', type=float, default='1', help='The threshold of how many standard deviations above or below the a line must deviate before it is corrected')
# parser.add_argument('-g', '--graph', action='store_true', help='Store a graph of the corrected and uncorrected line intensities for debug purposes.')
# parser.add_argument('-g', '--graph', action='store_true', help='Store a graph of the corrected and uncorrected line intensities for debug purposes.')
...
@@ -150,7 +152,7 @@ with open(os.path.join(mdocDir, inBaseName + "_alignFramesMC2.sh"), "w+") as scr
...
@@ -150,7 +152,7 @@ with open(os.path.join(mdocDir, inBaseName + "_alignFramesMC2.sh"), "w+") as scr