diff --git a/cluster/ICON_fromImodFiles.slurm b/cluster/ICON_fromImodFiles.slurm index 19eb0b47eab032a006588832c46badfe398b40d5..1a8dd4217be06a2d6d10110d275ff74650c8cd89 100755 --- a/cluster/ICON_fromImodFiles.slurm +++ b/cluster/ICON_fromImodFiles.slurm @@ -35,7 +35,7 @@ binFactor=`grep -i "^IMAGEBINNED" tilt.com |sed -e 's/^[[:alnum:]]\+\s\+//g'` numSlicesFull=`grep -i "^FULLIMAGE" tilt.com |sed -e 's/^[[:alnum:]]\+\s\+[[:alnum:]]\+\s\+//g'` numSlices=$((numSlicesFull/binFactor-1)) fullThickness=`grep -i "^THICKNESS" tilt.com |sed -e 's/^[[:alnum:]]\+\s\+//g'` -thickness=$((numSlicesFull/binFactor)) +thickness=$((fullThickness/binFactor)) mkdir -p $baseDir