scriptFile.write("# Script file for motioncor2 alignment of tilt series created by mc2FromMDOC.py on %s by %s\n\n"%(datetime.today().strftime('%Y-%m-%d %H:%M'),getpass.getuser()))
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@@ -122,16 +128,12 @@ with open(os.path.join(mdocDir, inBaseName + "_alignFramesMC2.sh"), "w+") as scr