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Commit fd1d0fb4 authored by Adrian Nievergelt's avatar Adrian Nievergelt
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Evaluate vars

parent ed02c345
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cluster/correctAndAlign.slurm
View file @ fd1d0fb4
......@@ -10,15 +10,15 @@
module load cuda/10.0.130
baseDir='/projects/project-nieverge'
k2correct='${baseDir}/scripts/processing/correctK2Lines.py'
mcorrBin='${baseDir}/bin/motioncor2/MotionCor2_1.2.3-Cuda100'
baseDir="/projects/project-nieverge"
k2correct="${baseDir}/scripts/processing/correctK2Lines.py"
mcorrBin="${baseDir}/bin/motioncor2/MotionCor2_1.2.3-Cuda100"
tomoProc='${baseDir}/tomoProc'
rawDir='${tomoProc}/raw'
correctedDir='${tomoProc}/corrected'
alignedDir='${tomoProc}/aligned'
stackDir='${tomoProc}/tiltStacks'
tomoProc="${baseDir}/tomoProc"
rawDir="${tomoProc}/raw"
correctedDir="${tomoProc}/corrected"
alignedDir="${tomoProc}/aligned"
stackDir="${tomoProc}/tiltStacks"
cd $baseDir
......
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