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nieverge
scripts
Commits
fd1d0fb4
Commit
fd1d0fb4
authored
May 15, 2019
by
Adrian Nievergelt
Browse files
Evaluate vars
parent
ed02c345
Changes
1
Hide whitespace changes
Inline
Side-by-side
cluster/correctAndAlign.slurm
View file @
fd1d0fb4
...
...
@@ -10,15 +10,15 @@
module load cuda/10.0.130
baseDir
=
'
/projects/project-nieverge
'
k2correct
=
'
${baseDir}/scripts/processing/correctK2Lines.py
'
mcorrBin
=
'
${baseDir}/bin/motioncor2/MotionCor2_1.2.3-Cuda100
'
baseDir
=
"
/projects/project-nieverge
"
k2correct
=
"
${
baseDir
}
/scripts/processing/correctK2Lines.py
"
mcorrBin
=
"
${
baseDir
}
/bin/motioncor2/MotionCor2_1.2.3-Cuda100
"
tomoProc
=
'
${baseDir}/tomoProc
'
rawDir
=
'
${tomoProc}/raw
'
correctedDir
=
'
${tomoProc}/corrected
'
alignedDir
=
'
${tomoProc}/aligned
'
stackDir
=
'
${tomoProc}/tiltStacks
'
tomoProc
=
"
${
baseDir
}
/tomoProc
"
rawDir
=
"
${
tomoProc
}
/raw
"
correctedDir
=
"
${
tomoProc
}
/corrected
"
alignedDir
=
"
${
tomoProc
}
/aligned
"
stackDir
=
"
${
tomoProc
}
/tiltStacks
"
cd
$baseDir
...
...
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