Commits · master · nieverge / scripts

18 Feb, 2020 1 commit
- ali generator slurm script · 8fbd5825
  Adrian Nievergelt authored Feb 18, 2020
  
  8fbd5825
16 Dec, 2019 1 commit
- corrected thickness bug · 822bf8bf
  Adrian Nievergelt authored Dec 16, 2019
  
  822bf8bf
05 Dec, 2019 2 commits
- added MOTL multiplyer scripts for general use · 988a1c2f
  Adrian Nievergelt authored Dec 05, 2019
  
  988a1c2f
- MotionCor2 processing script update to allow for wildcard mdoc input and... · 9bca8552
  Adrian Nievergelt authored Dec 05, 2019
```
MotionCor2 processing script update to allow for wildcard mdoc input and switch for line correction script.
```
  9bca8552
29 Nov, 2019 1 commit
- icon slurm job from imod files · 8c1392e8
  Adrian Nievergelt authored Nov 29, 2019
  
  8c1392e8
18 Nov, 2019 2 commits
- adjusted default paramters to more conservative · 0e1f738d
  Adrian Nievergelt authored Nov 18, 2019
  
  0e1f738d
- motioncor processing added options for doseweighted stacks including split sums for cryoCARE. · ef2f7b32
  Adrian Nievergelt authored Nov 18, 2019
  
  ef2f7b32
31 Oct, 2019 1 commit
- adjusted some default parameters · 0ed23c36
  Adrian Nievergelt authored Oct 31, 2019
  
  0ed23c36
29 Aug, 2019 3 commits
- Cleaned up cmdline arguments · da010fdb
  Adrian Nievergelt authored Aug 29, 2019
  
  da010fdb
- Updated documentation string · 55b60bef
  Adrian Nievergelt authored Aug 29, 2019
  
  55b60bef
- Added initial version of a rescaling script for mrc volumes, used for... · b5bc37e6
  Adrian Nievergelt authored Aug 29, 2019
```
Added initial version of a rescaling script for mrc volumes, used for rescaling masks and references during STA.
```
  b5bc37e6
28 Aug, 2019 3 commits
- initial version of multi-file capable MOTL list rescaler for unbinning · f0891c5f
  Adrian Nievergelt authored Aug 28, 2019
  
  f0891c5f
- changed motioncor2 scripts to be executable by default · 8e0e0910
  Adrian Nievergelt authored Aug 28, 2019
  
  8e0e0910
- update to icon slurm script · 561c2019
  Adrian Nievergelt authored Aug 28, 2019
  
  561c2019
21 Aug, 2019 1 commit
- script to do icon processing · 86a4ee80
  Adrian Nievergelt authored Aug 21, 2019
  
  86a4ee80
23 Jul, 2019 1 commit
- added group parameter to motioncor · 25463191
  Adrian Nievergelt authored Jul 23, 2019
  
  25463191
17 Jul, 2019 3 commits
- fix for log file · a90de517
  Adrian Nievergelt authored Jul 17, 2019
  
  a90de517
- added automated logging for alignment · f66549cb
  Adrian Nievergelt authored Jul 17, 2019
  
  f66549cb
- check for mdoc entries without subframes · a307a180
  Adrian Nievergelt authored Jul 17, 2019
  
  a307a180
08 Jul, 2019 1 commit
- added pixel size factor · cc61e72e
  Adrian Nievergelt authored Jul 08, 2019
  
  cc61e72e
05 Jul, 2019 1 commit
- allow spaces in the subframe directory · 5056bd13
  Adrian Nievergelt authored Jul 05, 2019
  
  5056bd13
24 Jun, 2019 1 commit
- fixed bug with unopenable mrcs · c7c82b53
  Adrian Nievergelt authored Jun 24, 2019
  
  c7c82b53
14 Jun, 2019 2 commits
- Merge branch 'master' of git.mpi-cbg.de:nieverge/scripts · 8a77773a
  Adrian Nievergelt authored Jun 14, 2019
  
  8a77773a
- fixed imodenv problem and local directroy check · 13d2032c
  Adrian Nievergelt authored Jun 14, 2019
  
  13d2032c
12 Jun, 2019 6 commits
- ignore aligned dir and remove unneccessary commandline switches · 6d25390c
  Adrian Nievergelt authored Jun 12, 2019
  
  6d25390c
- make mdoc parsing more robust and fix imod path · fd9379ff
  Adrian Nievergelt authored Jun 12, 2019
  
  fd9379ff
- fix silencing · f11dabbf
  Adrian Nievergelt authored Jun 12, 2019
  
  f11dabbf
- fix header and load imod · be0adc78
  Adrian Nievergelt authored Jun 12, 2019
  
  be0adc78
- additional check if no subframes found · ec49716b
  Adrian Nievergelt authored Jun 12, 2019
  
  ec49716b
- added script to create local motioncor2 series alignment from mdoc files · f2f91983
  Adrian Nievergelt authored Jun 12, 2019
  
  f2f91983
23 May, 2019 10 commits
- fix helpfile bug · 38467e1a
  Adrian Nievergelt authored May 23, 2019
  
  38467e1a
- flexible resolution setting · 5f7b1b1a
  Adrian Nievergelt authored May 23, 2019
  
  5f7b1b1a
- include reconstruction files in thumbnailing · 7400e12d
  Adrian Nievergelt authored May 23, 2019
  
  7400e12d
- fixed single file input bug · 388b9e45
  Adrian Nievergelt authored May 23, 2019
  
  388b9e45
- directroy mode for thumbnailer · e7dcd0ce
  Adrian Nievergelt authored May 23, 2019
  
  e7dcd0ce
- flip images for consistent display · 7d3ecfef
  Adrian Nievergelt authored May 23, 2019
  
  7d3ecfef
- flip images for consistent display · 81948448
  Adrian Nievergelt authored May 23, 2019
  
  81948448
- flip images for consistent display · 9d142bf8
  Adrian Nievergelt authored May 23, 2019
  
  9d142bf8
- flip images for consistent display · 62e2e1f2
  Adrian Nievergelt authored May 23, 2019
  
  62e2e1f2
- fixed wrong selection of montage frames · aeb03a33
  Adrian Nievergelt authored May 23, 2019
  
  aeb03a33