Commit 9bca8552 authored by Adrian Nievergelt's avatar Adrian Nievergelt

MotionCor2 processing script update to allow for wildcard mdoc input and...

MotionCor2 processing script update to allow for wildcard mdoc input and switch for line correction script.
parent 8c1392e8
......@@ -40,5 +40,5 @@ thickness=$((numSlicesFull/binFactor))
mkdir -p $baseDir
${iconPreproc} -i ${inputAli} -t ${tiltFile} -th ${specimenThickness} -o ${baseDir}_ipp.mrc
${iconGPU} -i ${baseDir}_ipp.mrc -t $2 -iter 80,160,80 -thr 0 -o ${baseDir} -s 0,${numSlices} -d 1
${iconGPU} -i ${baseDir}_ipp.mrc -t ${tiltFile} -iter 80,160,80 -thr 0 -o ${baseDir} -s 0,${numSlices} -d 1
${iconMask} -i ${baseDir}/reconstruction -t ${tiltFile} -th ${thickness} -cf ${baseDir}/crossValidation/crossV.frc -ff ${baseDir}/crossValidation/fullRec.frc -o ${baseDir}_icon.rec -s 0,${numSlices} -z ${zShift}
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