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Commit 821c4194 authored by incardon's avatar incardon
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Adding CMakeList to IO

parent fac23ddd
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Showing with 581 additions and 47 deletions
CMakeLists.txt 0 → 100644
View file @ 821c4194
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
project(openfpm_pdata LANGUAGES C CXX CUDA)
list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/cmake_modules/)
set(BOOST_INCLUDE ${Boost_INCLUDE_DIR} CACHE PATH "Include directory for BOOST")
set(HDF5_ROOT CACHE PATH "HDF5 root path")
set(SE_CLASS1 CACHE BOOL "Activate compilation with SE_CLASS1")
set(SE_CLASS2 CACHE BOOL "Activate compilation with SE_CLASS2")
set(SE_CLASS3 CACHE BOOL "Activate compilation with SE_CLASS3")
set(ENV{HDF5_ROOT} ${HDF5_ROOT})
if(NOT TINYOBJLOADER_FOUND)
set(TINYOBJLOADER_ROOT CACHE PATH "TinyObjLoader library path")
endif()
set(ENV{PATH} "$ENV{PATH}:${HDF5_ROOT}/bin")
set(HDF5_PREFER_PARALLEL TRUE)
find_package(Boost 1.52.0 REQUIRED unit_test_framework iostreams program_options)
find_package(CUDA)
find_package(MPI REQUIRED)
find_package(HDF5 REQUIRED)
find_package(TinyObjLoader )
if(CUDA_FOUND)
set(OPENFPM_INIT_FILE "initialize/initialize_wrapper_cuda.cu")
else()
set(OPENFPM_INIT_FILE "initialize/initialize_wrapper_cuda.cpp")
endif()
###### CONFIG.h FILE ######
if(SE_CLASS1)
set(DEFINE_SE_CLASS1 "#define SE_CLASS1")
endif()
if(SE_CLASS2)
set(DEFINE_SE_CLASS2 "#define SE_CLASS2")
endif()
if(SE_CLASS3)
set(DEFINE_SE_CLASS3 "#define SE_CLASS3")
endif()
if(CUDA_FOUND)
set(DEFINE_CUDA_GPU "#define CUDA_GPU")
endif()
if(MPI_FOUND)
set(DEFINE_HAVE_MPI "#define HAVE_MPI")
else()
message( FATAL_ERROR "MPI is required in order to install OpenFPM" )
endif()
if (Boost_FOUND)
set(DEFINE_HAVE_BOOST "#define HAVE_BOOST")
set(DEFINE_HAVE_BOOST_IOSTREAMS "#define HAVE_BOOST_IOSTREAMS")
set(DEFINE_HAVE_BOOST_PROGRAM_OPTIONS "#define HAVE_BOOST_PROGRAM_OPTIONS")
set(DEFINE_HAVE_BOOST_UNIT_TEST_FRAMEWORK "#define HAVE_BOOST_UNIT_TEST_FRAMEWORK")
else()
message( FATAL_ERROR "BOOST is required in order to install OpenFPM" )
endif()
if(HDF5_FOUND)
if (HDF5_IS_PARALLEL)
set(DEFINE_HAVE_HDF5 "#define HAVE_HDF5")
else()
message( STATUS "HDF5 found ${HDF5_INCLUDE_DIRS} does not have parallel support, OpenFPM require it" )
endif()
else()
message( FATAL_ERROR "HDF5 with parallel support is required in order to install OpenFPM" )
endif()
if(TINYOBJLOADER_FOUND)
set(DEFINE_HAVE_TINYOBJLOADER "#define HAVE_TINYOBJLOADER 1")
endif()
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/config/config_cmake.h.in ${CMAKE_CURRENT_SOURCE_DIR}/src/config/config.h)
include_directories(SYSTEM ${MPI_INCLUDE_PATH})
add_subdirectory (src)
cmake_modules/FindTinyObjLoader.cmake 0 → 100644
View file @ 821c4194
# - Try to find LibHilbert
# Once done this will define
#
# TINYOBJLOADER_FOUND - system has LibHilbert
# TINYOBJLOADER_INCLUDE_DIRS - include directories for PETSc
# TINYOBJLOADER_LIBRARY_DIRS - library directories for PETSc
# TINYOBJLOADER_LIBRARIES - libraries for PETSc
#
#=============================================================================
# Copyright (C) 2010-2016 Pietro Incardona
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# 1. Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# 2. Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in
# the documentation and/or other materials provided with the
# distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#=============================================================================
if (TINYOBJLOADER_FOUND OR TARGET tinyobjloader)
return()
endif()
add_library(tinyobjloader INTERFACE IMPORTED)
# Add libraries (static)
set(_libs "-L${TINYOBJLOADER_ROOT}/lib64 -ltinyobjloader")
set_property(TARGET tinyobjloader PROPERTY INTERFACE_LINK_LIBRARIES "${_libs}")
# Create LibHilbert test program
set(TINYOBJLOADER_TEST_LIB_CPP
"${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/tinyobjloader_test_lib.cpp")
file(WRITE ${TINYOBJLOADER_TEST_LIB_CPP} "
#define TINYOBJLOADER_IMPLEMENTATION
#include \"tiny_obj_loader.h\"
int main()
{
std::string inputfile = \"null.obj\";
tinyobj::attrib_t attrib;
std::vector<tinyobj::shape_t> shapes;
std::vector<tinyobj::material_t> materials;
std::string err;
bool ret = tinyobj::LoadObj(&attrib, &shapes, &materials, &err, inputfile.c_str());
return 0;
}
")
# Try to run test program (static linking)
try_run(
TINYOBJLOADER_TEST_LIB_EXITCODE
TINYOBJLOADER_TEST_LIB_COMPILED
${CMAKE_CURRENT_BINARY_DIR}
${TINYOBJLOADER_TEST_LIB_CPP}
CMAKE_FLAGS
"-DINCLUDE_DIRECTORIES:STRING=${TINYOBJLOADER_ROOT}/include"
"-DLINK_LIBRARIES:STRING=${TINYOBJLOADER_ROOT}/lib"
LINK_LIBRARIES tinyobjloader
COMPILE_OUTPUT_VARIABLE TINYOBJLOADER_TEST_LIB_COMPILE_OUTPUT
RUN_OUTPUT_VARIABLE TINYOBJLOADER_TEST_LIB_OUTPUT)
if (TINYOBJLOADER_TEST_LIB_COMPILED AND TINYOBJLOADER_TEST_LIB_EXITCODE EQUAL 0)
message(STATUS "Test TinyObjLoader_TEST_RUNS static linking - Success")
set(TINYOBJLOADER_TEST_RUNS TRUE)
set(TINYOBJLOADER_FOUND TRUE)
set(TINYOBJLOADER_INCLUDE_DIRS ${TINYOBJLOADER_ROOT}/include)
set(TINYOBJLOADER_LIBRARY_DIRS ${TINYOBJLOADER_ROOT}/lib64)
set(TINYOBJLOADER_LIBRARIES -ltinyobjloader)
else()
message(STATUS "Test TinyObjLoader_TEST_RUNS static linking - Failed")
set(TINYOBJLOADER_TEST_RUNS FALSE)
endif()
configure.ac
View file @ 821c4194
......@@ -186,7 +186,7 @@ AC_ARG_WITH([pdata],
AS_HELP_STRING([--with-pdata=directory],
[specify where is located the pdata project]),
[pdata_dir="$withval"],
[pdata_dir="../../openfpm_pdata/src"])
[pdata_dir="../../src"])
####### HDF5
......
src/CMakeLists.txt 0 → 100644
View file @ 821c4194
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
########################### Executables
add_executable(io main.cpp HDF5_wr/HDF5_writer_cuda.cu ObjReader/ObjReader_unit_test.cpp ../../openfpm_vcluster/src/VCluster/VCluster.cpp ../../openfpm_devices/src/memory/CudaMemory.cu ../../openfpm_devices/src/memory/HeapMemory.cpp ../../openfpm_devices/src/Memleak_check.cpp ../../openfpm_devices/src/memory/PtrMemory.cpp)
###########################
target_compile_options(io PUBLIC $<$<COMPILE_LANGUAGE:CUDA>:-Xcudafe "--display_error_number --diag_suppress=2885 --diag_suppress=2887 --diag_suppress=2888 --diag_suppress=186 --diag_suppress=111" --expt-extended-lambda>)
target_include_directories (io PUBLIC ${CUDA_INCLUDE_DIRS})
target_include_directories (io PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
target_include_directories (io PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/../../openfpm_devices/src/)
target_include_directories (io PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/../../openfpm_vcluster/src/)
target_include_directories (io PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/../../openfpm_data/src/)
target_include_directories (io PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/../../src/)
target_include_directories (io PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/config)
target_include_directories (io PUBLIC ${HDF5_ROOT}/include)
target_include_directories (io PUBLIC ${TINYOBJLOADER_INCLUDE_DIRS} )
target_link_libraries(io ${Boost_LIBRARIES})
target_link_libraries(io -L${HDF5_ROOT}/lib hdf5 hdf5_hl)
target_link_libraries(io -L${TINYOBJLOADER_LIBRARY_DIRS} -ltinyobjloader )
# Request that particles be built with -std=c++11
# As this is a public compile feature anything that links to particles
# will also build with -std=c++11
target_compile_features(io PUBLIC cxx_std_11)
target_link_libraries(io ${MPI_C_LIBRARIES})
install(FILES RawReader/RawReader.hpp
RawReader/RawReader_unit_tests.hpp
DESTINATION openfpm_io/include/RawReader )
install(FILES CSVWriter/csv_multiarray.hpp
CSVWriter/CSVWriter.hpp
CSVWriter/is_csv_writable.hpp
DESTINATION openfpm_io/include/CSVWriter/ )
install(FILES GraphMLWriter/GraphMLWriter.hpp
DESTINATION openfpm_io/include/GraphMLWriter )
install(FILES util/util.hpp util/GBoxes.hpp
DESTINATION openfpm_io/include/util )
install(FILES VTKWriter/VTKWriter.hpp
VTKWriter/byteswap_portable.hpp
VTKWriter/VTKWriter_dist_graph.hpp
VTKWriter/VTKWriter_graph.hpp
VTKWriter/VTKWriter_point_set.hpp
VTKWriter/VTKWriter_grids.hpp
VTKWriter/VTKWriter_grids_st.hpp
VTKWriter/VTKWriter_grids_util.hpp
VTKWriter/VTKWriter_vector_box.hpp
VTKWriter/is_vtk_writable.hpp
DESTINATION openfpm_io/include/VTKWriter/ )
install(FILES HDF5_wr/HDF5_wr.hpp
HDF5_wr/HDF5_writer.hpp
HDF5_wr/HDF5_writer_vd.hpp
HDF5_wr/HDF5_writer_gd.hpp
HDF5_wr/HDF5_reader_gd.hpp
HDF5_wr/HDF5_reader.hpp
HDF5_wr/HDF5_reader_vd.hpp
DESTINATION openfpm_io/include/HDF5_wr)
install(FILES Plot/GoogleChart.hpp Plot/util.hpp
DESTINATION openfpm_io/include/Plot )
#if(BUILD_TESTING)
# add_executable(particle_test test.cu)
# set_target_properties(particle_test PROPERTIES CUDA_SEPARABLE_COMPILATION ON)
# target_link_libraries(particle_test PRIVATE particles)
# add_test(NAME particles_10k COMMAND particle_test 10000 )
# add_test(NAME particles_256k COMMAND particle_test 256000 )
# if(APPLE)
# We need to add the default path to the driver (libcuda.dylib) as an rpath,
# so that the static cuda runtime can find it at runtime.
# set_property(TARGET particle_test PROPERTY BUILD_RPATH ${CMAKE_CUDA_IMPLICIT_LINK_DIRECTORIES})
# endif()
#endif()
src/CSVWriter/CSVWriter_unit_tests.hpp
View file @ 821c4194
......@@ -9,7 +9,7 @@ BOOST_AUTO_TEST_SUITE( csv_writer_test )
BOOST_AUTO_TEST_CASE( csv_writer_particles )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......
src/GraphMLWriter/GraphMLWriter_unit_tests.hpp
View file @ 821c4194
......@@ -77,7 +77,7 @@ const std::string ne_cp::attributes::name[] = {"x","y","z","double_num","long_nu
BOOST_AUTO_TEST_CASE( graphml_writer_use)
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......
src/HDF5_wr/HDF5_reader_gd.hpp
View file @ 821c4194
......@@ -88,7 +88,7 @@ public:
openfpm::vector<device_grid> & loc_grid_old,
openfpm::vector<GBoxes<device_grid::dims>> & gdb_ext_old)
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
MPI_Comm comm = v_cl.getMPIComm();
MPI_Info info = MPI_INFO_NULL;
......
src/HDF5_wr/HDF5_reader_vd.hpp
View file @ 821c4194
......@@ -14,7 +14,7 @@ class HDF5_reader<VECTOR_DIST>
{
private:
template<unsigned int dim, typename St,typename prp>
template<typename vector_pos_type, typename vector_prp_type>
bool load_block(long int bid,
hssize_t mpi_size_old,
int * metadata_out,
......@@ -22,8 +22,8 @@ private:
hid_t plist_id,
hid_t dataset_2,
size_t & g_m,
openfpm::vector<Point<dim,St>> & v_pos,
openfpm::vector<prp> & v_prp)
vector_pos_type & v_pos,
vector_prp_type & v_prp)
{
hsize_t offset[1];
hsize_t block[1];
......@@ -75,9 +75,9 @@ private:
Unpack_stat ps;
openfpm::vector<Point<dim, St>> v_pos_unp;
vector_pos_type v_pos_unp;
openfpm::vector<prp> v_prp_unp;
vector_prp_type v_prp_unp;
Unpacker<decltype(v_pos_unp),HeapMemory>::unpack(mem,v_pos_unp,ps,1);
Unpacker<decltype(v_prp_unp),HeapMemory>::unpack(mem,v_prp_unp,ps,1);
......@@ -101,12 +101,12 @@ private:
public:
template<unsigned int dim, typename St, typename prp> inline bool load(const std::string & filename,
openfpm::vector<Point<dim,St>> & v_pos,
openfpm::vector<prp> & v_prp,
template<typename vector_pos_type, typename vector_prp_type> inline bool load(const std::string & filename,
vector_pos_type & v_pos,
vector_prp_type & v_prp,
size_t & g_m)
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
v_pos.clear();
v_prp.clear();
......@@ -214,16 +214,16 @@ public:
stop_block = start_block + n_block.get(v_cl.getProcessUnitID());
if (mpi_rank >= mpi_size_old)
load_block(start_block,mpi_size_old,metadata_out,metadata_accum,plist_id,dataset_2,g_m,v_pos,v_prp);
{load_block(start_block,mpi_size_old,metadata_out,metadata_accum,plist_id,dataset_2,g_m,v_pos,v_prp);}
else
{
size_t n_bl = 0;
size_t lb = start_block;
for ( ; lb < stop_block ; lb++, n_bl++)
load_block(lb,mpi_size_old,metadata_out,metadata_accum,plist_id,dataset_2,g_m,v_pos,v_prp);
{load_block(lb,mpi_size_old,metadata_out,metadata_accum,plist_id,dataset_2,g_m,v_pos,v_prp);}
if (n_bl < max_block)
load_block(-1,mpi_size_old,metadata_out,metadata_accum,plist_id,dataset_2,g_m,v_pos,v_prp);
{load_block(-1,mpi_size_old,metadata_out,metadata_accum,plist_id,dataset_2,g_m,v_pos,v_prp);}
}
// Close open object
......
src/HDF5_wr/HDF5_writer_cuda.cu 0 → 100644
View file @ 821c4194
#include "config.h"
#define BOOST_TEST_DYN_LINK
#include <boost/test/unit_test.hpp>
#include "HDF5_wr.hpp"
#include "hdf5.h"
BOOST_AUTO_TEST_SUITE( vd_hdf5_chckpnt_rstrt_test_gpu )
// Dimensionality
const size_t dim = 3;
BOOST_AUTO_TEST_CASE( vector_dist_hdf5_save_test_gpu )
{
openfpm::vector_gpu<Point<3,float>> vpos;
openfpm::vector_gpu<aggregate<double,float[dim],size_t,float[dim][dim]>> vprp;
// Put forces
for (size_t i = 0 ; i < 1024 ; i++)
{
Point<3,float> p;
p.get(0) = i;
p.get(1) = i+13;
p.get(2) = i+17;
vpos.add(p);
vprp.add();
vprp.template get<0>(vprp.size()-1) = p.get(0) + 113.0;
vprp.template get<1>(vprp.size()-1)[0] = p.get(0) + 100.0;
vprp.template get<1>(vprp.size()-1)[1] = p.get(1) + 200.0;
vprp.template get<1>(vprp.size()-1)[2] = p.get(2) + 300.0;
vprp.template get<2>(vprp.size()-1) = p.get(0) + 10013.0;
vprp.template get<3>(vprp.size()-1)[0][0] = p.get(0) + 600.0;
vprp.template get<3>(vprp.size()-1)[0][1] = p.get(0) + 900.0;
vprp.template get<3>(vprp.size()-1)[0][2] = p.get(0) + 1600.0;
vprp.template get<3>(vprp.size()-1)[1][0] = p.get(0) + 5600.0;
vprp.template get<3>(vprp.size()-1)[1][1] = p.get(0) + 6900.0;
vprp.template get<3>(vprp.size()-1)[1][2] = p.get(0) + 7600.0;
vprp.template get<3>(vprp.size()-1)[2][0] = p.get(0) + 9600.0;
vprp.template get<3>(vprp.size()-1)[2][1] = p.get(0) + 1900.0;
vprp.template get<3>(vprp.size()-1)[2][2] = p.get(0) + 101600.0;
}
HDF5_writer<VECTOR_DIST> h5;
// Save the vector
h5.save("vector_dist.h5",vpos,vprp);
HDF5_reader<VECTOR_DIST> h5r;
openfpm::vector_gpu<Point<3,float>> vpos2;
openfpm::vector_gpu<aggregate<double,float[dim],size_t,float[dim][dim]>> vprp2;
size_t g_m = 0;
h5r.load("vector_dist.h5",vpos2,vprp2,g_m);
BOOST_REQUIRE_EQUAL(1024ul,vpos2.size());
BOOST_REQUIRE_EQUAL(1024ul,vprp2.size());
BOOST_REQUIRE_EQUAL(1024ul,g_m);
// Check that vpos == vpos2 and vprp2 == vprp2
bool check = true;
for (size_t i = 0 ; i < vpos.size() ; i++)
{
Point<3,float> p1 = vpos.get(i);
Point<3,float> p2 = vpos2.get(i);
check &= (p1 == p2);
check &= (vprp.template get<1>(i)[0] == vprp2.template get<1>(i)[0]);
check &= (vprp.template get<1>(i)[1] == vprp2.template get<1>(i)[1]);
check &= (vprp.template get<1>(i)[2] == vprp2.template get<1>(i)[2]);
check &= (vprp.template get<0>(i) == vprp2.template get<0>(i));
check &= (vprp.template get<2>(i) == vprp2.template get<2>(i));
check &= (vprp.template get<3>(i)[0][0] == vprp2.template get<3>(i)[0][0]);
check &= (vprp.template get<3>(i)[0][1] == vprp2.template get<3>(i)[0][1]);
check &= (vprp.template get<3>(i)[0][2] == vprp2.template get<3>(i)[0][2]);
check &= (vprp.template get<3>(i)[1][0] == vprp2.template get<3>(i)[1][0]);
check &= (vprp.template get<3>(i)[1][1] == vprp2.template get<3>(i)[1][1]);
check &= (vprp.template get<3>(i)[1][2] == vprp2.template get<3>(i)[1][2]);
check &= (vprp.template get<3>(i)[2][0] == vprp2.template get<3>(i)[2][0]);
check &= (vprp.template get<3>(i)[2][1] == vprp2.template get<3>(i)[2][1]);
check &= (vprp.template get<3>(i)[2][2] == vprp2.template get<3>(i)[2][2]);
}
BOOST_REQUIRE_EQUAL(check,true);
}
BOOST_AUTO_TEST_SUITE_END()
src/HDF5_wr/HDF5_writer_gd.hpp
View file @ 821c4194
......@@ -24,7 +24,7 @@ public:
const openfpm::vector<device_grid> & loc_grid,
const openfpm::vector<GBoxes<device_grid::dims>> & gdb_ext) const
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
//Pack_request vector
size_t req = 0;
......
src/HDF5_wr/HDF5_writer_unit_tests.hpp
View file @ 821c4194
......@@ -74,7 +74,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_hdf5_save_test )
BOOST_AUTO_TEST_CASE( vector_dist_hdf5_load_test )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
openfpm::vector<Point<3,float>> vpos;
openfpm::vector<aggregate<float[dim]>> vprp;
......
src/HDF5_wr/HDF5_writer_vd.hpp
View file @ 821c4194
......@@ -17,12 +17,12 @@ class HDF5_writer<VECTOR_DIST>
{
public:
template<unsigned int dim, typename St, typename prp>
template<typename vector_pos_type, typename vector_prp_type>
inline void save(const std::string & filename,
const openfpm::vector<Point<dim,St>> & v_pos,
const openfpm::vector<prp> & v_prp) const
const vector_pos_type & v_pos,
const vector_prp_type & v_prp) const
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
//Pack_request vector
size_t req = 0;
......
src/Makefile.am
View file @ 821c4194
LINKLIBS = $(PTHREAD_LIBS) $(HDF5_LDFLAGS) $(HDF5_LIBS) $(OPT_LIBS) $(BOOST_IOSTREAMS_LIB) $(BOOST_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_THREAD_LIB)
LINKLIBS = $(PTHREAD_LIBS) $(HDF5_LDFLAGS) $(HDF5_LIBS) $(OPT_LIBS) $(BOOST_IOSTREAMS_LIB) $(BOOST_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_THREAD_LIB) $(CUDA_LIBS)
noinst_PROGRAMS = io
io_SOURCES = main.cpp ../../openfpm_vcluster/src/VCluster/VCluster.cpp ../../openfpm_devices/src/memory/HeapMemory.cpp ../../openfpm_devices/src/Memleak_check.cpp ../../openfpm_devices/src/memory/PtrMemory.cpp
io_SOURCES = main.cpp ../../openfpm_vcluster/src/VCluster/VCluster.cpp ../../openfpm_devices/src/memory/CudaMemory.cu ../../openfpm_devices/src/memory/HeapMemory.cpp ../../openfpm_devices/src/Memleak_check.cpp ../../openfpm_devices/src/memory/PtrMemory.cpp
io_CXXFLAGS = $(AM_CXXFLAGS) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(HDF5_CPPFLAGS) $(BOOST_CPPFLAGS) -I/usr/local/include
io_CFLAGS = $(CUDA_CFLAGS)
io_LDADD = $(LINKLIBS)
io_LDADD = $(LINKLIBS)
nobase_include_HEADERS = RawReader/RawReader.hpp RawReader/RawReader_unit_tests.hpp CSVWriter/csv_multiarray.hpp CSVWriter/CSVWriter.hpp CSVWriter/is_csv_writable.hpp \
GraphMLWriter/GraphMLWriter.hpp util/util.hpp util/GBoxes.hpp \
......
src/Plot/Plot_unit_tests.hpp
View file @ 821c4194
......@@ -16,7 +16,7 @@ BOOST_AUTO_TEST_SUITE( plot_unit_test )
BOOST_AUTO_TEST_CASE( google_chart_bar_string )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -74,7 +74,7 @@ BOOST_AUTO_TEST_CASE( google_chart_bar_string )
BOOST_AUTO_TEST_CASE( google_chart )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -130,7 +130,7 @@ BOOST_AUTO_TEST_CASE( google_chart )
BOOST_AUTO_TEST_CASE( google_chart2 )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -179,7 +179,7 @@ BOOST_AUTO_TEST_CASE( google_chart2 )
BOOST_AUTO_TEST_CASE( google_chart3 )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -227,7 +227,7 @@ BOOST_AUTO_TEST_CASE( google_chart3 )
BOOST_AUTO_TEST_CASE( google_chart4 )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -268,7 +268,7 @@ BOOST_AUTO_TEST_CASE( google_chart4 )
BOOST_AUTO_TEST_CASE( google_chart5 )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -301,7 +301,7 @@ BOOST_AUTO_TEST_CASE( google_chart5 )
BOOST_AUTO_TEST_CASE( google_chart6 )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -326,7 +326,7 @@ BOOST_AUTO_TEST_CASE( google_chart6 )
BOOST_AUTO_TEST_CASE( google_chart_with_inject_HTML )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -389,7 +389,7 @@ BOOST_AUTO_TEST_CASE( google_chart_with_inject_HTML )
BOOST_AUTO_TEST_CASE( google_chart_linear_plot )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -456,7 +456,7 @@ BOOST_AUTO_TEST_CASE( google_chart_linear_plot )
BOOST_AUTO_TEST_CASE( google_chart_linear_plot2 )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......@@ -514,7 +514,7 @@ double f(double x)
BOOST_AUTO_TEST_CASE( plot_util )
{
Vcluster & v_cl = create_vcluster();
Vcluster<> & v_cl = create_vcluster();
if (v_cl.getProcessUnitID() != 0)
return;
......
src/RawReader/RawReader_unit_tests.hpp
View file @ 821c4194
......@@ -15,7 +15,7 @@ BOOST_AUTO_TEST_SUITE( raw_reader_unit_test )
BOOST_AUTO_TEST_CASE( raw_reader_read_test )
{