build_pdata.sh

#! /bin/bash

# Make a directory in /tmp/OpenFPM_pdata

echo "Directory: $1"
echo "Machine: $2"

mkdir src/config

git submodule init
if [ $? -ne 0 ]; then
  echo -e "Configure\033[91;5;1m FAILED \033[0m"
  exit 1
fi

git submodule update
if [ $? -ne 0 ]; then
  echo -e "Configure\033[91;5;1m FAILED \033[0m"
  exit 1
fi

mkdir openfpm_numerics/src/config


if [ "$2" == "gin" ]
then
 echo "Compiling on gin\n"
 source ~/.bashrc
 module load gcc/4.9.2
 ./install -s -c "--prefix=/home/jenkins/openfpm_install"
 make
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ;
 fi

 make install
 source $HOME/openfpm_vars

 if [ x"$3" == x"no_test" ]; then
   exit 0;
 fi

 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 2 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 3 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 4 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 5 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 6 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 7 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 8 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 9 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 10 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 11 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 12 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
elif [ "$2" == "wetcluster" ]
then
 echo "Compiling on wetcluster"

## produce the module path

 source ~/.bashrc
 module load gcc/4.9.2
 module load openmpi/1.8.1
 module load boost/1.54.0

 sh ./autogen.sh
 ./install -s -c "--with-boost=/sw/apps/boost/1.54.0/ CXX=mpic++"
 make

 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ;
 fi

 source $HOME/openfpm_vars

 ## Run on the cluster
 bsub -o output_run2.%J -K -n 2 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 2 ./src/pdata"
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run3.%J -K -n 3 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 3 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run4.%J -K -n 4 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 4 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run5.%J -K -n 5 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 5 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run6.%J -K -n 6 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 6 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run7.%J -K -n 7 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 7 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run8.%J -K -n 8 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 8 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run9.%J -K -n 9 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 9 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run10.%J -K -n 10 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 10 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run11.%J -K -n 11 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 11 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 bsub -o output_run12.%J -K -n 12 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; module load boost/1.54.0;  mpirun -np 12 ./src/pdata"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 # bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 32 ./src/vcluster"
 # if [ $? -ne 0 ]; then exit 1 ; fi
 # bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 64 ./src/vcluster"
 # if [ $? -ne 0 ]; then exit 1 ; fi
 # bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 128 ./src/vcluster"
 # if [ $? -ne 0 ]; then exit 1 ; fi

elif [ "$2" == "taurus" ]
then
 echo "Compiling on taurus"

 source /etc/profile
 echo "$PATH"
 module load eigen/3.2.0
 module load suitesparse/4.2.1-gnu-multimkl
 module load boost/1.60.0
 module load gcc/5.3.0
 module load openmpi/1.10.2-gnu
 module unload bullxmpi
 
 export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/incard/PARMETIS/lib:/home/incard/METIS/lib:/home/incard/HDF5/lib"

 ./install -i "/scratch/p_ppm/" -s -c"CXX=mpic++"
 make

 source $HOME/openfpm_vars

 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi

 export
 which salloc

 salloc --nodes=1 --ntasks-per-node=24 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 24 src/pdata --report_level=no"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 salloc --nodes=2 --ntasks-per-node=24 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 48 src/pdata --report_level=no"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 salloc --nodes=4 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 96 src/pdata --report_level=no"
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 salloc --nodes=8 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 192 src/pdata --report_level=no"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 salloc --nodes=10 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 240 src/pdata --report_level=no"
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi

else
 echo "Compiling general"
 source ~/.bashrc
 ./install -s
 make

 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ;
 fi

 if [ x"$3" == x"no_test" ]; then
   exit 0;
 fi

 source $HOME/openfpm_vars

 mpirun -np 1 ./src/pdata
 if [ $? -ne 0 ]; then
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ;
 fi
 mpirun -np 2 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 3 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
 mpirun -np 4 ./src/pdata
 if [ $? -ne 0 ]; then 
   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
   exit 1 ; 
 fi
fi

curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Info:\", \"color\": \"#00FF00\", \"text\":\"$2 completed succeffuly the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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