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openfpm_pdata
Commit 34549ae7 authored by incardon's avatar incardon
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parent 6ec615dd
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Showing with 61 additions and 23 deletions
CMakeLists.txt
View file @ 34549ae7
......@@ -46,14 +46,14 @@ if(ENABLE_GPU)
if (CUDA_VERSION_MAJOR EQUAL 9 AND CUDA_VERSION_MINOR EQUAL 2)
message("CUDA is compatible")
set(WARNING_SUPPRESSION_AND_OPTION_NVCC -Xcudafe "--display_error_number --diag_suppress=611 --diag_suppress=2885 --diag_suppress=2886 --diag_suppress=2887 --diag_suppress=2888 --diag_suppress=186 --diag_suppress=111" --expt-extended-lambda)
FILE(WRITE cuda_options " -Xcudafe \"--display_error_number --diag_suppress=611 --diag_suppress=2885 --diag_suppress=2886 --diag_suppress=2887 --diag_suppress=2888 --diag_suppress=186 --diag_suppress=111\" --expt-extended-lambda ")
elseif ( CUDA_VERSION_MAJOR EQUAL 10 AND CUDA_VERSION_MINOR EQUAL 1 )
message("CUDA is compatible")
set(WARNING_SUPPRESSION_AND_OPTION_NVCC -Xcudafe "--display_error_number --diag_suppress=2915 --diag_suppress=2912 --diag_suppress=2913 --diag_suppress=111 --diag_suppress=186 --diag_suppress=611 " --expt-extended-lambda)
set(WARNING_SUPPRESSION_AND_OPTION_NVCC -Xcudafe "--display_error_number --diag_suppress=2915 --diag_suppress=2912 --diag_suppress=2913 --diag_suppress=111 --diag_suppress=186 --diag_suppress=611 " --expt-extended-lambda )
FILE(WRITE cuda_options "-Xcudafe \"--display_error_number --diag_suppress=2915 --diag_suppress=2914 --diag_suppress=2912 --diag_suppress=2913 --diag_suppress=111 --diag_suppress=186 --diag_suppress=611 \" --expt-extended-lambda")
else()
message(FATAL_ERROR "CUDA is incompatible, version 9.2 is only supported")
message(FATAL_ERROR "CUDA is incompatible, version 9.2 and 10.1 is only supported")
endif()
endif()
......
example/Vector/7_SPH_dlb_gpu_opt/main.cu
View file @ 34549ae7
......@@ -42,7 +42,7 @@
#define PRINT_STACKTRACE
#define STOP_ON_ERROR
#define OPENMPI
#define SE_CLASS1
//#define SE_CLASS1
#include "Vector/vector_dist.hpp"
#include <math.h>
......@@ -97,7 +97,7 @@ const real_number MassBound = 0.0000767656;
#ifdef TEST_RUN
const real_number t_end = 0.001;
#else
const real_number t_end = 1.50;
const real_number t_end = 0.10;
#endif
// Gravity acceleration
......
install
View file @ 34549ae7
......@@ -426,7 +426,7 @@ else
echo "LIBS=-lvcluster -lofpm_pdata -lofpmmemory -lparmetis -lmetis -lboost_iostreams -lboost_program_options -lhdf5 -llibhilbert $lin_alg_lib -ldl" >> example.mk
echo "LIBS_SE2=-lvcluster -lofpmmemory_se2 -lparmetis -lmetis -lboost_iostreams -lboost_program_options -lhdf5 -llibhilbert $lin_alg_lib" >> example.mk
fi
echo "INCLUDE_PATH_NVCC=-Xcompiler="-Wno-deprecated-declarations" $(cat openmp_flags) -Xcudafe \"--display_error_number --diag_suppress=2885 --diag_suppress=2886 --diag_suppress=2887 --diag_suppress=2888 --diag_suppress=186 --diag_suppress=111\" --expt-extended-lambda -I. -I$install_base/openfpm_numerics/include -I$install_base/openfpm_pdata/include/config -I$install_base/openfpm_pdata/include -I$install_base/openfpm_data/include -I$install_base/openfpm_vcluster/include -I$install_base/openfpm_io/include -I$install_base/openfpm_devices/include -I$i_dir/METIS/include -I$i_dir/PARMETIS/include -I$i_dir/BOOST/include -I$i_dir/HDF5/include -I$i_dir/LIBHILBERT/include $lin_alg_inc" >> example.mk
echo "INCLUDE_PATH_NVCC=-Xcompiler="-Wno-deprecated-declarations" $(cat openmp_flags) "$(cat cuda_options)" -I. -I$install_base/openfpm_numerics/include -I$install_base/openfpm_pdata/include/config -I$install_base/openfpm_pdata/include -I$install_base/openfpm_data/include -I$install_base/openfpm_vcluster/include -I$install_base/openfpm_io/include -I$install_base/openfpm_devices/include -I$i_dir/METIS/include -I$i_dir/PARMETIS/include -I$i_dir/BOOST/include -I$i_dir/HDF5/include -I$i_dir/LIBHILBERT/include $lin_alg_inc" >> example.mk
cp example.mk src/example.mk
cp example.mk example/example.mk
......
openfpm_data @ f853fc87
Subproject commit 5651520e8f4efeb48e0395726699b07a16ed4736
Subproject commit f853fc87dc8edc9e77727f0034453afa7f5dbb4a
src/Decomposition/CartDecomposition.hpp
View file @ 34549ae7
......@@ -311,7 +311,7 @@ public:
// We reduce the size of the cells by a factor 8 in 3d 4 in 2d
for (size_t i = 0 ; i < dim ; i++)
{div_g[i] = gr.size(i)/2;}
{div_g[i] = (gr.size(i) == 1)?1:gr.size(i)/2;}
fine_s.Initialize(domain,div_g);
}
......
src/Vector/cuda/vector_dist_gpu_unit_tests.cu
View file @ 34549ae7
......@@ -308,7 +308,8 @@ void check_cell_list_cpu_and_gpu(vector_type & vd, CellList_type & NN, CellList_
BOOST_REQUIRE_EQUAL(test,true);
}
BOOST_AUTO_TEST_CASE( vector_dist_gpu_test)
template<typename CellList_type>
void vector_dist_gpu_test_impl()
{
auto & v_cl = create_vcluster();
......@@ -415,7 +416,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_gpu_test)
vd.hostToDevicePos();
vd.template hostToDeviceProp<0>();
auto NN = vd.getCellListGPU(0.1);
auto NN = vd.template getCellListGPU<CellList_type>(0.1);
auto NN_cpu = vd.getCellList(0.1);
check_cell_list_cpu_and_gpu(vd,NN,NN_cpu);
......@@ -425,6 +426,16 @@ BOOST_AUTO_TEST_CASE( vector_dist_gpu_test)
check_cell_list_cpu_and_gpu(vd,NN_up,NN_cpu);
}
BOOST_AUTO_TEST_CASE( vector_dist_gpu_test)
{
vector_dist_gpu_test_impl<CellList_gpu<3,float,CudaMemory,shift_only<3, float>>>();
}
BOOST_AUTO_TEST_CASE( vector_dist_gpu_test_sparse)
{
vector_dist_gpu_test_impl<CELLLIST_GPU_SPARSE<3,float>>();
}
template<typename St>
void vdist_calc_gpu_test()
{
......
src/Vector/tests/vector_dist_unit_test.cpp
View file @ 34549ae7
......@@ -1928,6 +1928,28 @@ BOOST_AUTO_TEST_CASE( vector_of_vector_dist )
BOOST_REQUIRE_EQUAL(cnt,4*4096ul);
}
BOOST_AUTO_TEST_CASE( vector_high_dimension )
{
// Here we define our domain a 2D box with internals from 0 to 1.0 for x and y
Box<10,double> domain;
for (size_t i = 0 ; i < 10 ; i++)
{
domain.setLow(i,0.0);
domain.setHigh(i,1.0);
}
// Here we define the boundary conditions of our problem
size_t bc[10];
for (size_t i = 0 ; i < 10 ; i++)
{bc[i] = NON_PERIODIC;};
// extended boundary around the domain, and the processor domain
Ghost<10,double> g(0.0);
// we check if the constructor does not stuck
vector_dist<10,double, aggregate<double,double[10]> > vd(16,domain,bc,g);
}
BOOST_AUTO_TEST_SUITE_END()
src/Vector/vector_dist.hpp
View file @ 34549ae7
......@@ -40,6 +40,8 @@
#define DEC_GRAN(gr) ((size_t)gr << 32)
template<unsigned int dim,typename St> using CELLLIST_GPU_SPARSE = CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>,unsigned int,int,true>;
#define VECTOR_DIST_ERROR_OBJECT std::runtime_error("Runtime vector distributed error");
#ifdef SE_CLASS3
......@@ -57,16 +59,16 @@
#define ID true
// Perform a ghost get or a ghost put
#define GET 1
#define PUT 2
constexpr int GET = 1;
constexpr int PUT = 2;
// Write the particles with ghost
#define NO_GHOST 0
#define WITH_GHOST 2
constexpr int NO_GHOST = 0;
constexpr int WITH_GHOST = 2;
#define GCL_NON_SYMMETRIC 0
#define GCL_SYMMETRIC 1
#define GCL_HILBERT 2
constexpr int GCL_NON_SYMMETRIC = 0;
constexpr int GCL_SYMMETRIC = 1;
constexpr int GCL_HILBERT = 2;
template<bool is_gpu_celllist>
struct gcl_standard_no_symmetric_impl
......@@ -1157,7 +1159,8 @@ public:
* \return the Cell list
*
*/
CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>> getCellListGPU(St r_cut, bool no_se3 = false)
template<typename CellType = CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>>>
CellType getCellListGPU(St r_cut, bool no_se3 = false)
{
#ifdef SE_CLASS3
if (no_se3 == false)
......@@ -1171,7 +1174,7 @@ public:
Ghost<dim,St> g = getDecomposition().getGhost();
g.magnify(1.013);
return getCellListGPU(r_cut, g,no_se3);
return getCellListGPU<CellType>(r_cut, g,no_se3);
}
......@@ -1190,7 +1193,8 @@ public:
* \return the CellList
*
*/
CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>> getCellListGPU(St r_cut, const Ghost<dim, St> & enlarge, bool no_se3 = false)
template<typename CellType = CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>>>
CellType getCellListGPU(St r_cut, const Ghost<dim, St> & enlarge, bool no_se3 = false)
{
#ifdef SE_CLASS3
if (no_se3 == false)
......@@ -1206,7 +1210,7 @@ public:
// Processor bounding box
cl_param_calculate(pbox, div, r_cut, enlarge);
CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>> cell_list(pbox,div);
CellType cell_list(pbox,div);
v_prp_out.resize(v_pos.size());
v_pos_out.resize(v_pos.size());
......@@ -1949,7 +1953,8 @@ public:
* \parameter Cell-list from which has been constructed the sorted vector
*
*/
template<unsigned int ... prp> void merge_sort(CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>> & cl, size_t n_thr = 1024)
template<unsigned int ... prp,typename id_1, typename id_2, bool is_sparse>
void merge_sort(CellList_gpu<dim,St,CudaMemory,shift_only<dim, St>,id_1,id_2,is_sparse> & cl, size_t n_thr = 1024)
{
#if defined(__NVCC__)
......
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