Fixing on taurus

build_pdata.sh

@@ -217,44 +217,41 @@ then
  echo "$PATH"
  module load eigen/3.2.0
  module load suitesparse/4.2.1-gnu-multimkl
- module load hdf5/1.8.14
- module unload bullxmpi
- module load boost/1.56.0-gnu4.9.1
- module unload gcc/4.9.1
- module load gcc/4.9.3
+ module load boost/1.60.0
+ module load gcc/5.3.0
  module load openmpi/1.10.2-gnu
  module unload bullxmpi
  
- export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/incard/PARMETIS/lib:/home/incard/METIS/lib"
+ export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/incard/PARMETIS/lib:/home/incard/METIS/lib:/home/incard/HDF5/lib"
 
- ./install -s -c"--with-metis=/sw/global/libraries/metis/5.1.0/x86_64/ --with-boost=/sw/taurus/libraries/boost/1.56.0-gnu4.9.1 CXX=mpic++"
+ ./install -s -c"CXX=mpic++ --with-boost=/sw/taurus/libraries/boost/1.60.0"
  make
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 
  fi
 
- salloc --nodes=1 --ntasks-per-node=24 --exclude=taurusi[6300-6400],taurusi[5400-5500] --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 24 src/pdata --report_level=no"
+ salloc --nodes=1 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 24 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 
  fi
- salloc --nodes=2 --ntasks-per-node=24 --exclude=taurusi[6300-6400],taurusi[5400-5500] --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 48 src/pdata --report_level=no"
+ salloc --nodes=2 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 48 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 
  fi
- salloc --nodes=4 --ntasks-per-node=24 --exclude=taurusi[6300-6400],taurusi[5400-5500] --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 96 src/pdata --report_level=no"
+ salloc --nodes=4 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 96 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then 
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 
  fi
- salloc --nodes=8 --ntasks-per-node=24 --exclude=taurusi[6300-6400],taurusi[5400-5500] --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 192 src/pdata --report_level=no"
+ salloc --nodes=8 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 192 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 
  fi
- salloc --nodes=10 --ntasks-per-node=24 --exclude=taurusi[6300-6400],taurusi[5400-5500] --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 240 src/pdata --report_level=no"
+ salloc --nodes=10 --ntasks-per-node=24 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 240 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ;