refactoring build script for submodules

build_pdata.sh

@@ -5,22 +5,14 @@
 echo "Directory: $1"
 echo "Machine: $2"
 
-mkdir /tmp/openfpm_pdata
-mv * .[^.]* /tmp/openfpm_pdata
-mv /tmp/openfpm_pdata OpenFPM_pdata
+mkdir src/config
 
-mkdir OpenFPM_pdata/src/config
+git submodule init
 
-git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_vcluster.git OpenFPM_vcluster
-git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_devices.git OpenFPM_devices
-git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_data.git OpenFPM_data
-git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_io.git OpenFPM_IO
 cd OpenFPM_data
 git checkout develop
 cd ..
 
-cd "$1/OpenFPM_pdata"
-
 if [ "$2" == "gin" ]
 then
  echo "Compiling on gin\n"

configure.ac

@@ -89,7 +89,7 @@ IMMDX_LIB_METIS([],[echo "Cannot detect metis, use the --with-metis option if it
 
 ####### include OpenFPM_devices include path
 
-INCLUDES_PATH+="-I. -Isrc/config/ -I../../metis_install/include -I../../OpenFPM_IO/src -I../../OpenFPM_data/src -I../../OpenFPM_devices/src -I../../OpenFPM_vcluster/src/"
+INCLUDES_PATH+="-I. -Isrc/config/ -I../openfpm_io/src -I../openfpm_data/src -I../openfpm_devices/src -I../openfpm_vcluster/src/"
 
 ##### CHECK FOR BOOST ##############
 

openfpm_data @ 1a289f3c

-Subproject commit 0403a926bfea4432e4d74950a3e4c7ae28418ab2
+Subproject commit 1a289f3c67d5b567d2edf7328f71892a772191b0

src/Makefile.am

@@ -2,7 +2,7 @@
 LINKLIBS = $(METIS_LIB) $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_LDFLAGS) $(BOOST_IOSTREAMS_LIB) $(CUDA_LIBS)
 
 bin_PROGRAMS = pdata
-pdata_SOURCES = main.cpp ../../OpenFPM_devices/src/memory/HeapMemory.cpp ../../OpenFPM_devices/src/memory/PtrMemory.cpp ../../OpenFPM_vcluster/src/VCluster.cpp ../../OpenFPM_data/src/Memleak_check.cpp
+pdata_SOURCES = main.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_data/src/Memleak_check.cpp
 pdata_CXXFLAGS = $(CUDA_CFLAGS) $(INCLUDES_PATH) $(METIS_INCLUDE) $(BOOST_CPPFLAGS)
 pdata_CFLAGS = $(CUDA_CFLAGS)
 pdata_LDADD = $(LINKLIBS) -L/usr/lib64/nvidia-bumblebee/ -lmetis