install 17.6 KB
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#! /bin/bash
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source script/help
source script/discover_os
source script/show_solutions
source script/pre_req
source script/remove_old
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source script/set_mpi
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source script/conf_PETSC
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source script/update_openfpm
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source script/solve_python
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### switch to the branch
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#b_switch=`git rev-parse --abbrev-ref HEAD`
#b_switch=
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b_switch=$(cat switch_branch)
if [ x"$b_switch" != x"" ]; then
        git checkout $b_switch
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	rm switch_branch
	./install "$@"
	exit 0
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fi

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## Check that your home is not empty

if [ x"$HOME" == x"" ]; then
	 echo -e "Your $HOME folder is empty \033[91;5;1m FAILED \033[0m"
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	 exit 1
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fi

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## If 

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install_req=1
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i_dir=""
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sq=0
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nomake=0
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update_openfpm=0
upgrade_openfpm=0
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gpu_support=0
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while getopts di:smghc:nu FLAG; do
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	case $FLAG in
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	    d)
	      echo "Disable depencencies installation"
	      install_req=0
	      ;;
	    i)
	      echo "Setting dependencies installation dir: $OPTARG"
	      i_dir=$OPTARG
	      ;;
	    s)
	      echo "Skipping user cin"
	      sq=1
	      ;;
	    c)
	      echo "Fowarding options $OPTARG to configure script"
	      configure_options=$OPTARG
	      ;;
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            m)
              echo "Skip compilation of the test"
              nomake=1
              ;;
	    g)
	      echo "Installing with GPU support"
	      gpu_support=1
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	      ;;
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	    u)
	      echo "Updating openfpm"
	      update_openfpm=1
	      ;;
	    n)
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          echo "Upgrading openfpm"
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	      upgrade_openfpm=1
	      ;;
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	    h)  #show help
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      	  HELP
          ;;
    	\?) #unrecognized option - are fowarded to configure
          ;;
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	esac
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done

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### Configure options

i_dir_old=$i_dir
configure_options_old=$configure_options

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discover_os

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## Remove old dependencies and installations

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if [ x"$i_dir" == x"" ]; then
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 i_dir="$HOME"
fi

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## Check and try to install the prerequisites


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if [ $update_openfpm -eq 1 -a  $upgrade_openfpm -eq 1 ]; then
	echo -e "\033[1;5;31m It is not possible to update and upgrade at the same time \033[0m"
	exit 1
fi

if [ $update_openfpm -eq 1 ]; then
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	update_openfpm update
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	exit 0
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fi

if [ $upgrade_openfpm -eq 1 ]; then
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	update_openfpm upgrade
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	exit 0
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fi

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remove_old $i_dir $configure_options
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## Check and try to install the prerequisites

pre_req

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## clone the dependencies
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git submodule init
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if [ $? -ne 0 ]; then
  echo -e "Configure\033[91;5;1m FAILED \033[0m"
  exit 1
fi
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git submodule update
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if [ $? -ne 0 ]; then
  echo -e "Configure\033[91;5;1m FAILED \033[0m"
  exit 1
fi
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#### Eventualy remove garbage from old installation

rm -rf openfpm_numerics/src/.deps
rm -rf src/.deps


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# Create config directory in each submodule
cd openfpm_data
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if [ ! -d src/config  ]; then
  mkdir src/config
fi
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cd ..

cd openfpm_devices
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if [ ! -d src/config  ]; then
  mkdir src/config
fi
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cd ..

cd openfpm_vcluster
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if [ ! -d src/config  ]; then
  mkdir src/config
fi
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cd ..

cd openfpm_io
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if [ ! -d src/config  ]; then
  mkdir src/config
fi
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cd ..

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cd openfpm_numerics
if [ ! -d src/config  ]; then
  mkdir src/config
fi
cd ..

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# Create config directory
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if [ ! -d src/config ]; then
  mkdir src/config
fi
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## generate configure script
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sh ./autogen.sh
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if [ $? -ne 0 ]; then
  echo -e "Configure\033[91;5;1m FAILED \033[0m"
  exit 1
fi
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## check for options
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echo -e "\033[1;34;5mDEPENCENCIES INSTALLATION DIR      \033[0m"
echo -e "Every required dependencies if needed will be installed into: \033[1;34;5m$i_dir\033[0m"
echo -e "if you want to install somewhere else do ./install -i /somewhere/else"
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if [ x"$configure_options" == x"" ]; then
    echo -e "OpenFPM will be installed into: \033[1;34;5m/usr/local\033[0m"
    echo "if you want to install in a different place use ./install -c \"--prefix=/where/you/want/to/install\""
fi
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if [ $sq -eq 0 ]; then
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  unset commands
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#  commands[0]="continue"
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  possible_solutions "${commands[@]}"
fi
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ncore=4
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echo -e "\033[1mHow many core you want to use to install the dependencies?\033[0m"
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if [ $sq -eq 0 ]; then
  read ncore
fi
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echo -e "Installing requirements into: $i_dir "

##

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## Take all the options with the exception of -d -i -s
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## call the configure script

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### Installing PETSC

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if [ ! -d "$i_dir/PETSC" -o ! -f "$i_dir/PETSC/include/petsc.h" -o ! -d "$i_dir/EIGEN" ]; then
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    echo -e "\033[1;34m Optional packages  \033[0m"
    echo -e "\033[1mDo you want to install linear algebra packages ?(y/n)\033[0m"
    echo "Installation can take long time (90 minutes on i7-3612QM 4 cores)"
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    if [ $sq -eq 0 ]; then
      read inst_lin_alg
    else
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      inst_lin_alg="y"
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    fi
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    ### PETSC require Python

    command -v python
    if [ $? -ne 0 ]; then
      ### We have to install python
      echo "OpenFPM require python but it's not installed, searching a solution... "
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      solve_python $platform
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      command -v python
      if [ $? -ne 0 ]; then
	echo -e "python\033[91;5;1m FAILED \033[0m"
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        exit 1
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      fi
    fi
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    if haveProg python2; then
      python_command=python2
    else
      # we check that python is python2
      py_ver=$(python --version 2>&1 | grep Python | sed 's/.*\([0-9][0-9]*\)\.\([0-9][0-9]*\)\.\([0-9][0-9]*\)/\1/g')
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      if [ $py_ver -eq 3 ]; then
        # we have to install python2
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	echo -e "\033[1mPETSC require python2 installed, searching a solution to install python2 ... \033[0m"
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        solve_python $platform
      fi
      python_command=python
    fi

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fi

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#### License and Copyright disclamer

echo -e "\033[1;34m Licenses  \033[0m"
echo -e "\033[1;34m OpenFPM install several dependencies automatically. Some of them impose restriction and the user must explicitly accept it \033[0m"
echo -e "\033[1;33m PARMETIS: \033[0m \033[1m http://glaros.dtc.umn.edu/gkhome/metis/parmetis/download  (Copyright and License) \033[0m"
echo -e ""

if [ $sq -eq 0 ]; then
  unset commands
  commands[0]="Accept and continue"
  possible_solutions_no_continue "${commands[@]}"
fi

####

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lin_alg_dir=""
lin_alg_lib=""
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lin_alg_inc=""
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if [ -d "$i_dir/BOOST" ]; then
    configure_options=" $configure_options --with-boost=$i_dir/BOOST "
fi
if [ -d "$i_dir/HDF5" ]; then
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    configure_options=" $configure_options --with-hdf5=$i_dir/HDF5/ "
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fi
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if [ -d "$i_dir/LIBHILBERT" ]; then
    configure_options=" $configure_options --with-libhilbert=$i_dir/LIBHILBERT "
fi
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### if we are on linux we have to add -rt

if [ x"$platform" = x"linux" ]; then
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	lin_alg_lib="$lin_alg_lib -lrt"
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fi

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### MPI compilers must be in your PATH folder

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set_mpi $i_dir $ncore $gpu_support $CC $CXX $F77 $FC
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### METIS and ParMETIS must be installed independently from sistem wide installation

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./script/install_Parmetis.sh $i_dir $ncore
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configure_options=" $configure_options --with-parmetis=$i_dir/PARMETIS "
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./script/install_Metis.sh $i_dir $CC $CXX $ncore
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configure_options=" $configure_options --with-metis=$i_dir/METIS "
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if [ x"$gpu_support" == x"1" ]; then
	configure_options=" $configure_options --enable-gpu "
fi

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MPI_installed=0
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MPI_System_prv=1
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METIS_installed=1
PARMETIS_installed=1
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BOOST_installed=0
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BOOST_System_prv=1
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LAPACK_installed=0
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LAPACK_System_prv=1
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SUITESPARSE_installed=0
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SUITESPARSE_System_prv=1
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EIGEN_installed=0
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EIGEN_System_prv=1
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HDF5_installed=0
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HDF5_System_prv=1
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LIBHILBERT_installed=0
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conf_err=1

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if [ $install_req -eq 0 ]; then
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    ./configure $options $configure_options "$configure_blas_option"
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else
    while [ $conf_err -ne 0 ]
    do
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	pwd
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        ./configure $options $configure_options "$configure_blas_option"
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        conf_err=$?

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        echo "Configure script terminated with $conf_err"
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        ## if METIS installation required install it
        if [ $conf_err -eq 201  ]; then
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            echo "Metis not found try to install"
            if [ $METIS_installed -eq 1  ]; then
                echo "Error the installation of METIS failed"
                exit 1
            fi
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            ./script/install_Metis.sh $i_dir $CC $CXX
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            METIS_installed=1
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            configure_options=" $configure_options --with-metis=$i_dir/METIS "
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        elif [ $conf_err -eq 202 ]; then
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            echo "Boost not found try to install in $i_dir with $compiler_opt"
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            if [ $BOOST_installed -eq 1  ]; then
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                echo "Error the installation of Boost failed"
                exit 1
            fi
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            if [ x"$CXX" == x"icpc" ]; then
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              ./script/install_BOOST.sh $i_dir $ncore intel-linux
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            elif [ x"$CXX" == x"clang++" ]; then
              ./script/install_BOOST.sh $i_dir $ncore darwin
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            else
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	      if [ x"$CXX" == x"gcc" ]; then
              	./script/install_BOOST.sh $i_dir $ncore gcc
	      else
		./script/install_BOOST.sh $i_dir $ncore gcc $(which $CXX) $dgc_major $dgc_middle
	      fi
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            fi
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            BOOST_installed=1
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            configure_options=" $configure_options --with-boost=$i_dir/BOOST "
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        elif [ $conf_err -eq 208 ]; then
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            echo "ParMetis not found try to install"
            if [ $PARMETIS_installed -eq 1  ]; then
                echo "Error the installation of ParMETIS failed"
                exit 1
            fi
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            ./script/install_Parmetis.sh $i_dir $ncore
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            PARMETIS_installed=1
            configure_options=" $configure_options --with-parmetis=$i_dir/PARMETIS "
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        elif [ $conf_err -eq 207 ]; then
            echo "HDF5 not found try to install"
            if [ $HDF5_installed -eq 1 ]; then
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                echo "Error the installation of HDF5 failed"
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                exit 1
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            fi
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            ./script/install_HDF5.sh $i_dir $ncore
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            configure_options=" $configure_options --with-hdf5=$i_dir/HDF5/ "
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            HDF5_installed=1
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        elif [ $conf_err -eq 210 ]; then
            echo "LIBHILBERT not found try to install"
            if [ $LIBHILBERT_installed -eq 1 ]; then
                echo "Error the installation of LIBHILBERT failed"
                exit 1
            fi
            ./script/install_LIBHILBERT.sh $i_dir $ncore
            configure_options=" $configure_options --with-libhilbert=$i_dir/LIBHILBERT "
            LIBHILBERT_installed=1
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        elif [ $conf_err -ne 0 ]; then
            echo "I do not know how to recover from this error"
            exit 1
        fi
    done
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    if [ x"$inst_lin_alg" == x"y" ]; then
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        CXX="$CXX" CC="$CC" FC="$FC" F77="$F77" ./script/install_EIGEN.sh $i_dir $ncore
        CXX="$CXX" CC="$CC" FC="$FC" F77="$F77" ./script/install_PETSC.sh $i_dir $ncore $CC $CXX $F77 $FC
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    fi

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    ### collect PETSC configuration options
    conf_PETSC
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    ./configure $options $configure_options "$configure_blas_option"
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fi

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### Create example.mk
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install_base=$(cat install_dir)
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openmp_flags="$(cat openmp_flags)"
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if [ -d "$i_dir/HDF5/lib" ]; then
  hdf5_lib=$i_dir/HDF5/lib
elif [ -d "$i_dir/HDF5/lib64" ]; then
  hdf5_lib=$i_dir/HDF5/lib64
fi

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echo "INCLUDE_PATH=-Wno-deprecated-declarations $openmp_flags  -I. -I$install_base/openfpm_numerics/include -I$install_base/openfpm_pdata/include/config -I$install_base/openfpm_pdata/include -I$install_base/openfpm_data/include -I$install_base/openfpm_vcluster/include -I$install_base/openfpm_io/include -I$install_base/openfpm_devices/include -I$i_dir/METIS/include -I$i_dir/PARMETIS/include -I$i_dir/BOOST/include -I$i_dir/HDF5/include -I$i_dir/LIBHILBERT/include  $lin_alg_inc" > example.mk
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echo "LIBS_PATH= $openmp_flags -L$install_base/openfpm_devices/lib -L$install_base/openfpm_pdata/lib  -L$install_base/openfpm_vcluster/lib -L$i_dir/METIS/lib -L$i_dir/PARMETIS/lib  -L$i_dir/BOOST/lib -L$hdf5_lib -L$i_dir/LIBHILBERT/lib  $lin_alg_dir " >> example.mk
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if [ x"$gpu_support" == x"1" ]; then
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    echo "LIBS=-lvcluster -lofpm_pdata -lofpmmemory -lparmetis -lmetis -lboost_iostreams -lhdf5 -llibhilbert $(cat cuda_lib) $lin_alg_lib $(cat mpi_libs) -ldl" >> example.mk
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    echo "LIBS_SE2=-lvcluster -lofpmmemory_se2 -lparmetis -lmetis -lboost_iostreams -lhdf5 -llibhilbert $(cat cuda_lib) $lin_alg_lib" >> example.mk
else
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    echo "LIBS=-lvcluster -lofpm_pdata -lofpmmemory -lparmetis -lmetis -lboost_iostreams -lhdf5 -llibhilbert  $lin_alg_lib $(cat mpi_libs) -ldl" >> example.mk
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    echo "LIBS_SE2=-lvcluster -lofpmmemory_se2 -lparmetis -lmetis -lboost_iostreams -lhdf5 -llibhilbert $lin_alg_lib" >> example.mk
fi
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echo "INCLUDE_PATH_NVCC=-Xcompiler="-Wno-deprecated-declarations" $(cat openmp_flags) -Xcudafe \"--display_error_number --diag_suppress=2885  --diag_suppress=2886 --diag_suppress=2887  --diag_suppress=2888 --diag_suppress=186 --diag_suppress=111\" --expt-extended-lambda -I. -I$install_base/openfpm_numerics/include -I$install_base/openfpm_pdata/include/config -I$install_base/openfpm_pdata/include -I$install_base/openfpm_data/include -I$install_base/openfpm_vcluster/include -I$install_base/openfpm_io/include -I$install_base/openfpm_devices/include -I$i_dir/METIS/include -I$i_dir/PARMETIS/include -I$i_dir/BOOST/include -I$i_dir/HDF5/include -I$i_dir/LIBHILBERT/include  $lin_alg_inc" >> example.mk
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cp example.mk src/example.mk
cp example.mk example/example.mk
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if [ $nomake -eq 0 ]; then
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  make clean
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  make VERBOSE=1  -j $ncore
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fi
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if [ $? -ne 0 ]; then
  conf_err=1
fi

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echo "Command used to configure"
echo ""
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echo -e "\033[1m ./configure $options $configure_options \033[0m "
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echo ""
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if [ x"$platform" == x"linux" -o x"$platform" == x"cygwin" ]; then
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  bash_library="export LD_LIBRARY_PATH=\"\$LD_LIBRARY_PATH:/$install_base/openfpm_devices/lib:/$install_base/openfpm_vcluster/lib"
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else
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  bash_library="export DYLD_LIBRARY_PATH=\"\$DYLD_LIBRARY_PATH:/$install_base/openfpm_devices/lib:/$install_base/openfpm_vcluster/lib"
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fi

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bash_path="export PATH=\""
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echo -e "\033[1;34;5m ---------------------------------------  \033[0m"
echo -e "\033[1;34;5m --------- INSTALLATION REPORT ---------  \033[0m"
echo ""
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echo -e "\033[1;34;5m ---------- Mandatory packages ---------  \033[0m"
echo ""
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if [ -d "$i_dir/MPI" ]; then
  installation_report="$installation_report \033[92;1mMPI\033[0m Installed: \033[1m $i_dir/MPI \033[0m\n"
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  bash_path="$bash_path:$i_dir/MPI/bin:"
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  bash_library="$bash_library:$i_dir/MPI/lib"
elif [ $MPI_System_prv -eq 1 ]; then
  installation_report="$installation_report \033[92;1mMPI\033[0m Installed: \033[1m System installation \033[0m\n"
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fi
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if [ -d "$i_dir/METIS" ]; then
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  installation_report="$installation_report \033[92;1mMETIS\033[0m Installed: \033[1m $i_dir/METIS \033[0m\n"
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  bash_library="$bash_library:$i_dir/METIS/lib"
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fi

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if [ -d "$i_dir/PARMETIS" ]; then
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  installation_report="$installation_report \033[92;1mPARMETIS\033[0m Installed: \033[1m $i_dir/PARMETIS \033[0m\n"
  bash_library="$bash_library:$i_dir/PARMETIS/lib"
fi

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if [ -d "$i_dir/BOOST" ]; then
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  installation_report="$installation_report \033[92;1mBOOST\033[0m Installed: \033[1m $i_dir/BOOST \033[0m\n"
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  bash_library="$bash_library:$i_dir/BOOST/lib"
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elif [ $BOOST_System_prv -eq 1 ]; then
  installation_report="$installation_report \033[92;1mBOOST\033[0m Installed: \033[1m System installation \033[0m\n"
fi

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if [ -d "$i_dir/HDF5" ]; then
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  installation_report="$installation_report \033[92;1mHDF5\033[0m Installed: \033[1m $i_dir/HDF5 \033[0m\n"
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  bash_library="$bash_library:$hdf5_lib"
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fi
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if [ -d "$i_dir/LIBHILBERT" ]; then
  installation_report="$installation_report \033[92;1mLibHilbert\033[0m Installed: \033[1m $i_dir/LIBHILBERT \033[0m\n"
  bash_library="$bash_library:$i_dir/LIBHILBERT/lib"
fi

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echo -e "$installation_report"

echo ""
echo -e "\033[1;34;5m ---------- Optional packages -----------  \033[0m"
echo ""

installation_report=""
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lin_alg_installed=""
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if [ -d "$i_dir/PETSC" -a -f "$i_dir/PETSC/include/petsc.h" ]; then
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  installation_report="$installation_report \033[92;1mPETSC\033[0m Installed: \033[1m $i_dir/PETSC \033[0m\n"
  bash_library="$bash_library:$i_dir/PETSC/lib"
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  lin_alg_installed="y"
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else
  installation_report="$installation_report \033[91;1mPETSC\033[0m Installed: \033[1m NO \033[0m\n"
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fi
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if [ -d "$i_dir/EIGEN" ]; then
  installation_report="$installation_report \033[92;1mEIGEN\033[0m Installed: \033[1m $i_dir/EIGEN \033[0m\n"
fi

echo -e "$installation_report"

echo -e "\033[1;34;5m --------------------------------  \033[0m"

installation_report=""

if [ -d "$i_dir/OPENBLAS" ]; then
  installation_report="$installation_report \033[92;1mOPENBLAS\033[0m Installed: \033[1m $i_dir/OPENBLAS \033[0m\n"
  bash_library="$bash_library:$i_dir/OPENBLAS/lib"
else
  installation_report="$installation_report \033[91;1mOPENBLAS\033[0m Installed: \033[1m NO \033[0m\n"
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fi
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if [ -d "$i_dir/SUITESPARSE"  -a -f "$i_dir/SUITESPARSE/include/umfpack.h" ]; then
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  installation_report="$installation_report \033[92;1mSUITESPARSE\033[0m Installed: \033[1m $i_dir/SUITESPARSE \033[0m\n"
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  bash_library="$bash_library:$i_dir/SUITESPARSE/lib"
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else
  installation_report="$installation_report \033[91;1mSUITESPARSE\033[0m Installed: \033[1m NO \033[0m\n"
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fi
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bash_path="$bash_path\$PATH\""
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bash_library="$bash_library\""
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##### Writing openfpm_vars file

echo "$bash_path" > $HOME/openfpm_vars
echo "$bash_library" >> $HOME/openfpm_vars

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if [ x"$platform" = x"osx" ]; then
    echo "TMPDIR=/tmp/" >> $HOME/openfpm_vars
fi

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echo -e "$installation_report"
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echo ""
echo ""
if [ $conf_err -eq 0  ]; then
  echo -e "Install summary\033[92;5;1m SUCCEED \033[0m"
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  ## Save dependencies dir and foward options
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  printf "%s" "$i_dir_old" > dependencies_dir
  printf "%s" "$configure_options_old" > foward_options
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else
  echo -e "Install summary\033[91;5;1m FAILED \033[0m"
fi

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echo ""
if [ x"$platform" = x"linux" ]; then
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  echo "Before run any openfpm program you must execute the following command. A simple way would be to append this line at the end of your $HOME/.bashrc"
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else
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  echo "Before run any openfpm program you must execute the following command. A simple way would be to append this line at the end of your $HOME/.bash_profile"
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fi
echo ""
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echo -e "\033[1m source $HOME/openfpm_vars \033[0m"
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echo ""
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echo ""
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echo -e "Remember to do: \033[91;5;1m make install \033[0m"
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echo ""
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if [ x"$inst_lin_alg" == "y" -a x"$lin_alg_installed" == x"" ]; then
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  conf_err=1
fi
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if [ $conf_err -ne 0 ]; then
  exit 1
fi