VCluster.hpp 26 KB
Newer Older
incardon's avatar
incardon committed
1 2 3
#ifndef VCLUSTER
#define VCLUSTER

4
#include "config.h"
incardon's avatar
incardon committed
5
#include <mpi.h>
6
#include "MPI_wrapper/MPI_util.hpp"
incardon's avatar
incardon committed
7 8 9
#include "VCluster_object.hpp"
#include "VCluster_object_array.hpp"
#include "Vector/map_vector.hpp"
10 11 12
#include "MPI_wrapper/MPI_IallreduceW.hpp"
#include "MPI_wrapper/MPI_IrecvW.hpp"
#include "MPI_wrapper/MPI_IsendW.hpp"
incardon's avatar
incardon committed
13
#include "MPI_wrapper/MPI_IAllGather.hpp"
incardon's avatar
incardon committed
14
#include <exception>
15
#include "Vector/map_vector.hpp"
16 17
#ifdef DEBUG
#include "util/check_no_pointers.hpp"
18
#include "util/util_debug.hpp"
19
#endif
incardon's avatar
incardon committed
20
#include "util/Vcluster_log.hpp"
incardon's avatar
incardon committed
21 22 23

#define MSG_LENGTH 1024
#define MSG_SEND_RECV 1025
24
#define SEND_SPARSE 4096
incardon's avatar
incardon committed
25 26 27
#define NONE 1
#define NEED_ALL_SIZE 2

28 29
#define SERIVCE_MESSAGE_TAG 16384
#define SEND_RECV_BASE 8192
incardon's avatar
incardon committed
30
#define GATHER_BASE 24576
incardon's avatar
incardon committed
31

Pietro Incardona's avatar
Pietro Incardona committed
32
// number of vcluster instances
incardon's avatar
incardon committed
33
extern size_t n_vcluster;
Pietro Incardona's avatar
Pietro Incardona committed
34
// Global MPI initialization
incardon's avatar
incardon committed
35 36
extern bool global_mpi_init;

incardon's avatar
incardon committed
37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82
///////////////////// Post functions /////////////

template<typename T> void assign(T * ptr1, T * ptr2)
{
	*ptr1 = *ptr2;
};

//////////////////////////////////////////////////

// temporal buffer for reductions
union red
{
	char c;
	unsigned char uc;
	short s;
	unsigned short us;
	int i;
	unsigned int ui;
	float f;
	double d;
};

/*! \brief Virtual Cluster exception
 *
 * This a a class that signal an exception on MPI_WaitAll
 *
 */

class exec_exception: public std::exception
{
  virtual const char* what() const throw()
  {
    return "One or more request has failed or reported an error";
  }
};

/*! \brief This class is virtualize the cluster as a set of processing unit
 *         and communication unit
 *
 * This class virtualize the cluster as a set of processing unit and communication
 * unit. It can execute any vcluster_exe
 *
 */

class Vcluster
{
incardon's avatar
incardon committed
83 84
	Vcluster_log log;

85 86 87 88 89 90 91 92 93 94 95 96 97 98
	//! NBX has a potential pitfall that must be addressed
	//! NBX Send all the messages and than probe for incoming messages
	//! If there is an incoming message it receive it producing
	//! an acknowledge notification on the sending processor.
	//! when all the sends has been acknowledged the processor call the MPI_Ibarrier
	//! when all the processor call MPI_Ibarrier all send has been received.
	//! While the processors are waiting for the MPI_Ibarrier to complete on all processor
	//! they are still have to probe for incoming message, Unfortunately some processor
	//! can receive acnoledge from the MPI_Ibarrier before others and this mean that some
	//! processor can exit the probing status before others, these processor can in theory
	//! start new communications while the other processor are still in probing status producing
	//! a wrong send/recv association to
	//! resolve this problem an incremental NBX_cnt is used as message TAG to distinguish that the
	//! messages come from other send or subsequent NBX procedures
incardon's avatar
incardon committed
99
	size_t NBX_cnt;
100

incardon's avatar
incardon committed
101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143
	// temporal vector used for meta-communication
	// ( or meta-data before the real communication )
	openfpm::vector<size_t> proc_com;

	// vector that contain the scatter map (it is basically an array of one)
	openfpm::vector<int> map_scatter;

	// vector of MPI requests
	openfpm::vector<MPI_Request> req;

	// vector of MPI status
	openfpm::vector<MPI_Status> stat;

	// vector of functions to execute after all the request has been performed
	std::vector<int> post_exe;

	// Object array


	// Single objects

	// number of processes
	int size;
	// actual rank
	int rank;

	// number of processing unit per process
	int numPE = 1;

	/* This buffer is a temporal buffer for reductions
	 *
	 * MPI_Iallreduce does not accept recv and send buffer to be the same
	 * r is used to overcome this problem (is given as second parameter)
	 * after the execution the data is copied back
	 *
	 */
	std::vector<red> r;

public:

	// Finalize the MPI program
	~Vcluster()
	{
Pietro Incardona's avatar
Pietro Incardona committed
144 145 146
#ifdef SE_CLASS2
		check_delete(this);
#endif
Pietro Incardona's avatar
Pietro Incardona committed
147
//		n_vcluster--;
incardon's avatar
incardon committed
148 149

		// if there are no other vcluster instances finalize
Pietro Incardona's avatar
Pietro Incardona committed
150
//		if (n_vcluster == 0)
incardon's avatar
incardon committed
151
			MPI_Finalize();
incardon's avatar
incardon committed
152 153 154 155
	}

	//! \brief Virtual cluster constructor
	Vcluster(int *argc, char ***argv)
incardon's avatar
incardon committed
156
	:NBX_cnt(0)
incardon's avatar
incardon committed
157
	{
Pietro Incardona's avatar
Pietro Incardona committed
158 159 160 161
#ifdef SE_CLASS2
		check_new(this,8,VCLUSTER_EVENT,PRJ_VCLUSTER);
#endif

Pietro Incardona's avatar
Pietro Incardona committed
162
//		n_vcluster++;
incardon's avatar
incardon committed
163 164 165 166

		// Check if MPI is already initialized
		if (global_mpi_init == false)
		{
incardon's avatar
incardon committed
167

incardon's avatar
incardon committed
168 169 170
			MPI_Init(argc,argv);
			global_mpi_init = true;
		}
incardon's avatar
incardon committed
171 172 173 174 175 176 177

		//! Get the total number of process
		//! and the rank of this process

		MPI_Comm_size(MPI_COMM_WORLD, &size);
		MPI_Comm_rank(MPI_COMM_WORLD, &rank);

178
#ifdef SE_CLASS2
incardon's avatar
incardon committed
179 180 181 182 183 184 185 186 187 188
			process_v_cl = rank;
#endif

		//! create and fill map scatter with one
		map_scatter.resize(size);

		for (size_t i = 0 ; i < map_scatter.size() ; i++)
		{
			map_scatter.get(i) = 1;
		}
incardon's avatar
incardon committed
189 190 191

		// open the log file
		log.openLog(rank);
incardon's avatar
incardon committed
192 193
	}

194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229
#ifdef DEBUG

	/*! \brief Check for wrong types
	 *
	 * In general we do not know if a type T make sense to be sent or not, but if it has pointer
	 * inside it does not. This function check if the basic type T has a method called noPointers,
	 * This function in general notify if T has internally pointers. If T has pointer an error
	 * is printed, is T does not have the method a WARNING is printed
	 *
	 * \tparam T type to check
	 *
	 */
	template<typename T> void checkType()
	{
		// if T is a primitive like int, long int, float, double, ... make sense
		// (pointers, l-references and r-references are not fundamentals)
		if (std::is_fundamental<T>::value == true)
			return;

		// if it is a pointer make no sense
		if (std::is_pointer<T>::value == true)
			std::cerr << "Error: " << __FILE__ << ":" << __LINE__ << " the type " << demangle(typeid(T).name()) << " is a pointer, sending pointers values has no sense\n";

		// if it is an l-value reference make no send
		if (std::is_lvalue_reference<T>::value == true)
			std::cerr << "Error: " << __FILE__ << ":" << __LINE__ << " the type " << demangle(typeid(T).name()) << " is a pointer, sending pointers values has no sense\n";

		// if it is an r-value reference make no send
		if (std::is_rvalue_reference<T>::value == true)
			std::cerr << "Error: " << __FILE__ << ":" << __LINE__ << " the type " << demangle(typeid(T).name()) << " is a pointer, sending pointers values has no sense\n";

		// ... if not, check that T has a method called noPointers
		switch (check_no_pointers<T>::value())
		{
			case PNP::UNKNOWN:
			{
incardon's avatar
incardon committed
230
				std::cerr << "Warning: " << __FILE__ << ":" << __LINE__ << " impossible to check the type " << demangle(typeid(T).name()) << " please consider to add a static method \"static bool noPointers()\" \n" ;
231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246
				break;
			}
			case PNP::POINTERS:
			{
				std::cerr << "Error: " << __FILE__ << ":" << __LINE__ << " the type " << demangle(typeid(T).name()) << " has pointers inside, sending pointers values has no sense\n";
				break;
			}
			default:
			{

			}
		}
	}

#endif

incardon's avatar
incardon committed
247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284
	//! Get the total number of processing units
	size_t getProcessingUnits()
	{
		return size*numPE;
	}

	//! Get the process unit id
	size_t getProcessUnitID()
	{
		return rank;
	}

	/*! \brief Allocate a set of objects
	 *
	 * \tparam obj
	 * \param n number of object
	 *
	 * \return an object representing an array of objects
	 *
	 */
	template <typename obj> Vcluster_object_array<obj> allocate(size_t n)
	{
		// Vcluster object array
		Vcluster_object_array<obj> vo;

		// resize the array
		vo.resize(n);

		// Create the object on memory and return a Vcluster_object_array
		return vo;
	}

	/*! \brief Sum the number across all processors and get the result
	 *
	 * \param num to reduce, input and output
	 *
	 */

285
	template<typename T> void sum(T & num)
incardon's avatar
incardon committed
286
	{
287 288 289 290
#ifdef DEBUG
		checkType<T>();
#endif

incardon's avatar
incardon committed
291 292 293 294 295 296 297 298 299
		// reduce over MPI

		// Create one request
		req.add();

		// reduce
		MPI_IallreduceW<T>::reduce(num,MPI_SUM,req.last());
	}

incardon's avatar
incardon committed
300 301 302 303 304 305 306 307
	/*! \brief Get the maximum number across all processors (or reduction with insinity norm)
	 *
	 * \param num to reduce
	 *
	 */

	template<typename T> void max(T & num)
	{
308 309 310
#ifdef DEBUG
		checkType<T>();
#endif
incardon's avatar
incardon committed
311 312 313 314 315 316 317 318 319
		// reduce over MPI

		// Create one request
		req.add();

		// reduce
		MPI_IallreduceW<T>::reduce(num,MPI_MAX,req.last());
	}

incardon's avatar
incardon committed
320 321 322 323 324 325 326 327 328
	// vector of pointers of send buffers
	openfpm::vector<void *> ptr_send;

	// vector of the size of send buffers
	openfpm::vector<size_t> sz_send;

	// sending map
	openfpm::vector<size_t> map;

incardon's avatar
incardon committed
329 330 331 332 333
	// barrier request
	MPI_Request bar_req;
	// barrier status
	MPI_Status bar_stat;

334
	// Distributed processor graph
incardon's avatar
incardon committed
335
//	MPI_Comm proc_comm_graph;
336 337 338 339 340 341 342 343 344

	/*! \brief
	 *
	 * Set the near processor of this processors
	 *
	 */

	openfpm::vector<size_t> NN_proc;

incardon's avatar
incardon committed
345
/*	void setLocality(openfpm::vector<size_t> NN_proc)
346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364
	{
		// Number of sources in the graph, and sources processors
		size_t sources = NN_proc.size();
		openfpm::vector<int> src_proc;

		// number of destination in the graph
		size_t dest = NN_proc.size();
		openfpm::vector<int> dest_proc;

		// insert in sources and out sources
		for (size_t i = 0; i < NN_proc.size() ; i++)
		{
			src_proc.add(NN_proc.get(i));
			dest_proc.add(NN_proc.get(i));
			// Copy the vector
			this->NN_proc.get(i) = NN_proc.get(i);
		}

		MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,sources,&src_proc.get(0),(const int *)MPI_UNWEIGHTED,dest,&dest_proc.get(0),(const int *)MPI_UNWEIGHTED,MPI_INFO_NULL,true,&proc_comm_graph);
incardon's avatar
incardon committed
365
	}*/
366 367 368 369 370 371 372 373 374

	/*! \brief Send and receive multiple messages within local processors
	 *
	 * It send multiple messages and receive
	 * other multiple messages, all the processor must call this
	 * function
	 *
	 * \param prc list of processors with which it should communicate
	 *
incardon's avatar
incardon committed
375
	 * \param v vector containing the data to send (it is allowed to have 0 size vector)
376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396
	 *
	 * \param msg_alloc This is a call-back with the purpose of allocate space
	 *        for the incoming message and give back a valid pointer, the 6 parameters
	 *        in the call-back are in order:
	 *        1) message size required to receive from i
	 *        2) total message size to receive from all the processors
	 *        3) the total number of processor want to communicate with you
	 *        4) processor id
	 *        5) ri request id (it is an id that goes from 0 to total_p, and is unique
	 *           every time message_alloc is called)
	 *        6) void pointer parameter for additional data to pass to the call-back
	 *
	 * \param opt options, NONE or NEED_ALL_SIZE, with NEED_ALL_SIZE the allocation
	 *        callback will not be called until all the message size will be
	 *        gathered, [usefull for example with you want to allocate one big buffer
	 *        to gather all the messages]
	 *
	 */

	template<typename T> void sendrecvMultipleMessagesNBX(openfpm::vector< size_t > & prc, openfpm::vector< T > & data, void * (* msg_alloc)(size_t,size_t,size_t,size_t,size_t,void *), void * ptr_arg, long int opt=NONE)
	{
397 398 399
#ifdef DEBUG
		checkType<typename T::value_type>();
#endif
400 401 402 403 404 405 406 407 408 409 410 411 412
		// resize the pointer list
		ptr_send.resize(prc.size());
		sz_send.resize(prc.size());

		for (size_t i = 0 ; i < prc.size() ; i++)
		{
			ptr_send.get(i) = data.get(i).getPointer();
			sz_send.get(i) = data.get(i).size() * sizeof(typename T::value_type);
		}

		sendrecvMultipleMessagesNBX(prc.size(),(size_t *)sz_send.getPointer(),(size_t *)prc.getPointer(),(void **)ptr_send.getPointer(),msg_alloc,ptr_arg,opt);
	}

incardon's avatar
incardon committed
413 414 415

	/*! \brief Send and receive multiple messages
	 *
416
	 * It send multiple messages and receive
incardon's avatar
incardon committed
417 418 419 420 421
	 * other multiple messages, all the processor must call this
	 * function
	 *
	 * \param prc list of processors with which it should communicate
	 *
422 423
	 * \param nn_prc near processors
	 *
incardon's avatar
incardon committed
424 425 426
	 * \param v vector containing the data to send
	 *
	 * \param msg_alloc This is a call-back with the purpose of allocate space
427 428 429 430 431 432 433 434 435
	 *        for the incoming message and give back a valid pointer, the 6 parameters
	 *        in the call-back are in order:
	 *        1) message size required to receive from i
	 *        2) total message size to receive from all the processors
	 *        3) the total number of processor want to communicate with you
	 *        4) processor id
	 *        5) ri request id (it is an id that goes from 0 to total_p, and is unique
	 *           every time message_alloc is called)
	 *        6) void pointer parameter for additional data to pass to the call-back
incardon's avatar
incardon committed
436 437 438 439 440 441 442 443
	 *
	 * \param opt options, NONE or NEED_ALL_SIZE, with NEED_ALL_SIZE the allocation
	 *        callback will not be called until all the message size will be
	 *        gathered, [usefull for example with you want to allocate one big buffer
	 *        to gather all the messages]
	 *
	 */

444
	template<typename T> void sendrecvMultipleMessagesPCX(openfpm::vector< size_t > & prc, openfpm::vector< T > & data, void * (* msg_alloc)(size_t,size_t,size_t,size_t,size_t,void *), void * ptr_arg, long int opt=NONE)
incardon's avatar
incardon committed
445
	{
446 447 448
#ifdef DEBUG
		checkType<typename T::value_type>();
#endif
incardon's avatar
incardon committed
449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468
		// resize map with the number of processors
		map.resize(size);

		// reset the sending buffer
		map.fill(0);

		// create sending map
		for (size_t i = 0 ; i < prc.size() ; i++)
		{map.get(prc.get(i)) = 1;}

		// resize the pointer list
		ptr_send.resize(prc.size());
		sz_send.resize(prc.size());

		for (size_t i = 0 ; i < prc.size() ; i++)
		{
			ptr_send.get(i) = data.get(i).getPointer();
			sz_send.get(i) = data.get(i).size() * sizeof(typename T::value_type);
		}

469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509
		sendrecvMultipleMessagesPCX(prc.size(),(size_t *)map.getPointer(),(size_t *)sz_send.getPointer(),(size_t *)prc.getPointer(),(void **)ptr_send.getPointer(),msg_alloc,ptr_arg,opt);
	}

	/*! \brief Send and receive multiple messages local
	 *
	 * It send multiple messages to the near processor the and receive
	 * other multiple messages from the, all the processor must call this
	 * function
	 *
	 * \param n_send number of send this processor must do
	 *
	 * \param sz the array contain the size of the message for each processor
	 *        (zeros must be omitted)
	 *
	 *        [Example] for the previous patter 5 10 15 4 mean processor 1
	 *        message size 5 byte, processor 6 message size 10 , ......
	 *
	 * \param prc list of processor with which it should communicate
	 *        [Example] for the previous case should be
	 *        1 6 7 8 (prc and mp contain the same information in different
	 *        format, giving both reduce the computation)
	 *
	 * \param ptr array that contain the messages pointers
	 *
	 * \param msg_alloc This is a call-back with the purpose of allocate space
	 *        for the incoming message and give back a valid pointer, the 6 parameters
	 *        in the call-back are in order:
	 *        1) message size required to receive from i
	 *        2) total message size to receive from all the processors
	 *        3) the total number of processor want to communicate with you
	 *        4) processor id
	 *        5) ri request id (it is an id that goes from 0 to total_p, and is unique
	 *           every time message_alloc is called)
	 *        6) void pointer parameter for additional data to pass to the call-back
	 *
	 * \param opt options, NONE (ignored in this moment)
	 *
	 */

	void sendrecvMultipleMessagesNBX(size_t n_send , size_t sz[], size_t prc[] , void * ptr[], void * (* msg_alloc)(size_t,size_t,size_t,size_t,size_t,void *), void * ptr_arg, long int opt)
	{
510 511 512 513 514
		if (stat.size() != 0 || req.size() != 0)
			std::cerr << "Error: " << __FILE__ << ":" << __LINE__ << " this function must be called when no other requests are in progress \n";


		stat.clear();
515 516 517 518 519
		req.clear();
		// Do MPI_Issend

		for (size_t i = 0 ; i < n_send ; i++)
		{
incardon's avatar
incardon committed
520 521 522
			if (sz[i] != 0)
			{
				req.add();
523
				MPI_SAFE_CALL(MPI_Issend(ptr[i], sz[i], MPI_BYTE, prc[i], SEND_SPARSE + NBX_cnt, MPI_COMM_WORLD,&req.last()));
incardon's avatar
incardon committed
524
				log.logSend(prc[i]);
incardon's avatar
incardon committed
525
			}
526 527 528 529 530 531 532
		}

		size_t rid = 0;
		int flag = false;

		bool reached_bar_req = false;

incardon's avatar
incardon committed
533 534
		log.start(10);

535 536 537
		// Wait that all the send are acknowledge
		do
		{
incardon's avatar
incardon committed
538

539 540 541 542 543
			// flag that notify that this processor reach the barrier
			// Barrier request

			MPI_Status stat_t;
			int stat = false;
544
			MPI_SAFE_CALL(MPI_Iprobe(MPI_ANY_SOURCE,SEND_SPARSE + NBX_cnt,MPI_COMM_WORLD,&stat,&stat_t));
545

546
			// If I have an incoming message and is related to this NBX communication
547 548 549 550 551 552 553 554 555
			if (stat == true)
			{
				// Get the message size
				int msize;
				MPI_SAFE_CALL(MPI_Get_count(&stat_t,MPI_BYTE,&msize));

				// Get the pointer to receive the message
				void * ptr = msg_alloc(msize,0,0,stat_t.MPI_SOURCE,rid,ptr_arg);

incardon's avatar
incardon committed
556 557 558
				// Log the receiving request
				log.logRecv(stat_t);

559 560
				rid++;

561
				MPI_SAFE_CALL(MPI_Recv(ptr,msize,MPI_BYTE,stat_t.MPI_SOURCE,SEND_SPARSE+NBX_cnt,MPI_COMM_WORLD,&stat_t));
562 563 564 565 566 567 568
			}

			// Check the status of all the MPI_issend and call the barrier if finished

			if (reached_bar_req == false)
			{
				int flag = false;
incardon's avatar
incardon committed
569 570 571 572
				if (req.size() != 0)
				{MPI_SAFE_CALL(MPI_Testall(req.size(),&req.get(0),&flag,MPI_STATUSES_IGNORE));}
				else
					flag = true;
573 574 575 576 577 578

				// If all send has been completed
				if (flag == true)
				{MPI_SAFE_CALL(MPI_Ibarrier(MPI_COMM_WORLD,&bar_req));reached_bar_req = true;}
			}

incardon's avatar
incardon committed
579
			// Check if all processor reached the async barrier
580
			if (reached_bar_req)
incardon's avatar
incardon committed
581
			{MPI_SAFE_CALL(MPI_Test(&bar_req,&flag,&bar_stat))};
incardon's avatar
incardon committed
582 583

			// produce a report if communication get stuck
incardon's avatar
incardon committed
584
			log.NBXreport(NBX_cnt,req,reached_bar_req,bar_stat);
incardon's avatar
incardon committed
585

586 587 588 589 590 591
		} while (flag == false);

		// Remove the executed request

		req.clear();
		stat.clear();
incardon's avatar
incardon committed
592
		log.clear();
593 594 595

		// Circular counter
		NBX_cnt = (NBX_cnt + 1) % 1024;
incardon's avatar
incardon committed
596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636
	}

	/*! \brief Send and receive multiple messages
	 *
	 * It send multiple (to more than one) messages and receive
	 * other multiple messages, all the processor must call this
	 * function
	 *
	 * \param n_send number of send this processor must do
	 *
	 * \param map array containing an array of unsigned chars that
	 *        specify the communication pattern of the processor
	 *
	 *        [Example]   0 1 0 0 0 0 1 1 1 mean that the processor
	 *        communicate with the processor 1 6 7 8
	 *
	 * \param sz the array contain the size of the message for each processor
	 *        (zeros must be omitted)
	 *
	 *        [Example] for the previous patter 5 10 15 4 mean processor 1
	 *        message size 5 byte, processor 6 message size 10 , ......
	 *
	 * \param prc list of processor with which it should communicate
	 *        [Example] for the previous case should be
	 *        1 6 7 8 (prc and mp contain the same information in different
	 *        format, giving both reduce the computation)
	 *
	 * \param ptr array that contain the message (zero lengh must be omitted)
	 *
	 * \param msg_alloc This is a call-back with the purpose of allocate space
	 *        for the incoming message and give back a valid pointer, the 3 parameters
	 *        in the call-back are  , total message to receive, i processor id from witch
	 *        to receive
	 *
	 * \param opt options, NONE or NEED_ALL_SIZE, with NEED_ALL_SIZE the allocation
	 *        callback will not be called until all the message size will be
	 *        gathered, [usefull for example with you want to allocate one big buffer
	 *        to gather all the messages]
	 *
	 */

637
	void sendrecvMultipleMessagesPCX(size_t n_send, size_t * map, size_t sz[], size_t prc[] , void * ptr[], void * (* msg_alloc)(size_t,size_t,size_t,size_t,size_t,void *), void * ptr_arg, long int opt)
incardon's avatar
incardon committed
638
	{
639 640 641 642
		if (stat.size() != 0 || req.size() != 0)
			std::cerr << "Error: " << __FILE__ << ":" << __LINE__ << " this function must be called when no other requests are in progress \n";

		stat.clear();
incardon's avatar
incardon committed
643
		req.clear();
644

incardon's avatar
incardon committed
645
		req.add();
incardon's avatar
incardon committed
646
		stat.add();
incardon's avatar
incardon committed
647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679

		proc_com.resize(1);

		MPI_SAFE_CALL(MPI_Ireduce_scatter(map,&proc_com.get(0),&map_scatter.get(0),MPI_UNSIGNED_LONG,MPI_SUM,MPI_COMM_WORLD,&req.last()));
		MPI_SAFE_CALL(MPI_Waitall(req.size(),&req.get(0),&stat.get(0)));

		// Remove the executed request

		req.clear();
		stat.clear();

		// Allocate the temporal buffer to store the message size for each processor

		size_t n_proc_com = proc_com.get(0);
		proc_com.resize(n_proc_com * 2);

		// queue n_proc_com MPI_Irecv with source ANY_SOURCE to get
		// the message length from each processor and
		//  send the message length to each processor

		for (size_t i = 0 ; i < n_proc_com ; i++)
		{
			req.add();
			MPI_SAFE_CALL(MPI_Irecv(&proc_com.get(i),1,MPI_UNSIGNED_LONG,MPI_ANY_SOURCE,MSG_LENGTH,MPI_COMM_WORLD,&req.last()));
		}

		for (size_t i = 0 ; i < n_send ; i++)
		{
			req.add();
			MPI_SAFE_CALL(MPI_Isend(&sz[i],1,MPI_UNSIGNED_LONG,prc[i],MSG_LENGTH,MPI_COMM_WORLD,&req.last()));
		}

		stat.resize(req.size());
680
		if (req.size() != 0) {MPI_SAFE_CALL(MPI_Waitall(req.size(),&req.get(0),&stat.get(0)));}
incardon's avatar
incardon committed
681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706

		// Use proc_com to get the processor id that try to communicate

		for (size_t i = 0 ; i < n_proc_com ; i++)
		{
			proc_com.get(n_proc_com+i) = stat.get(i).MPI_SOURCE;
		}

		// Remove the executed request

		req.clear();
		stat.clear();

		// Calculate the total size of the message

		size_t total_msg = 0;

		for (size_t i = 0 ; i < n_proc_com ; i++)
		{
			total_msg += proc_com.get(i);
		}

		// Receive the message

		for (size_t i = 0 ; i < n_proc_com ; i++)
		{
incardon's avatar
incardon committed
707
			void * ptr = msg_alloc(proc_com.get(i),total_msg,n_proc_com,proc_com.get(n_proc_com+i),i,ptr_arg);
incardon's avatar
incardon committed
708 709 710 711 712 713 714 715 716 717 718 719 720 721

			req.add();
			MPI_SAFE_CALL(MPI_Irecv(ptr,proc_com.get(i),MPI_BYTE,proc_com.get(i+n_proc_com),MSG_SEND_RECV,MPI_COMM_WORLD,&req.last()));
		}

		// Send all the messages this processor must send

		for (size_t i = 0 ; i < n_send ; i++)
		{
			req.add();
			MPI_SAFE_CALL(MPI_Isend(ptr[i],sz[i],MPI_BYTE,prc[i],MSG_SEND_RECV,MPI_COMM_WORLD,&req.last()));
		}

		stat.resize(req.size());
722
		if (req.size() != 0) {MPI_SAFE_CALL(MPI_Waitall(req.size(),&req.get(0),&stat.get(0)));}
incardon's avatar
incardon committed
723 724 725 726 727 728 729

		// Remove the executed request

		req.clear();
		stat.clear();
	}

730 731 732 733 734 735
	/*! \brief Send data to a processor
	 *
	 * \warning In order to avoid deadlock every send must be coupled with a recv
	 *          in case you want to send data without knowledge from the other side
	 *          consider to use sendRecvMultipleMessages
	 *
incardon's avatar
incardon committed
736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760
	 * \warning operation is asynchronous execute must be called to ensure they are executed
	 *
	 * \see sendRecvMultipleMessages
	 *
	 * \param proc processor id
	 * \param tag id
	 * \param mem buffer with the data to send
	 * \param sz size
	 *
	 * \return true if succeed false otherwise
	 *
	 */
	bool send(size_t proc, size_t tag, void * mem, size_t sz)
	{
		// send over MPI

		// Create one request
		req.add();

		// send
		MPI_IsendWB::send(proc,SEND_RECV_BASE + tag,mem,sz,req.last());

		return true;
	}

incardon's avatar
incardon committed
761

incardon's avatar
incardon committed
762 763 764 765 766 767 768
	/*! \brief Send data to a processor
	 *
	 * \warning In order to avoid deadlock every send must be coupled with a recv
	 *          in case you want to send data without knowledge from the other side
	 *          consider to use sendRecvMultipleMessages
	 *
	 * \warning operation is asynchronous execute must be called to ensure they are executed
769 770 771 772 773 774 775
	 *
	 * \see sendRecvMultipleMessages
	 *
	 * \param proc processor id
	 * \param tag id
	 * \param v buffer to send
	 *
776 777
	 * \return true if succeed false otherwise
	 *
778
	 */
779
	template<typename T, typename Mem, typename gr> bool send(size_t proc, size_t tag, openfpm::vector<T,Mem,gr> & v)
780 781 782 783 784 785 786 787 788 789
	{
#ifdef DEBUG
		checkType<T>();
#endif

		// send over MPI

		// Create one request
		req.add();

790
		// send
791
		MPI_IsendW<T,Mem,gr>::send(proc,SEND_RECV_BASE + tag,v,req.last());
792 793

		return true;
794 795 796 797 798 799 800 801
	}

	/*! \brief Recv data from a processor
	 *
	 * \warning In order to avoid deadlock every recv must be coupled with a send
	 *          in case you want to send data without knowledge from the other side
	 *          consider to use sendRecvMultipleMessages
	 *
incardon's avatar
incardon committed
802
	 * \warning operation is asynchronous execute must be called to ensure they are executed
803 804 805 806 807 808
	 *
	 * \see sendRecvMultipleMessages
	 *
	 * \param proc processor id
	 * \param tag id
	 * \param v buffer to send
incardon's avatar
incardon committed
809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826
	 * \param sz size of the buffer
	 *
	 * \return true if succeed false otherwise
	 *
	 */
	bool recv(size_t proc, size_t tag, void * v, size_t sz)
	{
		// recv over MPI

		// Create one request
		req.add();

		// receive
		MPI_IrecvWB::recv(proc,SEND_RECV_BASE + tag,v,sz,req.last());

		return true;
	}

incardon's avatar
incardon committed
827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861
    /*! \brief Recv data from a processor
     *
     * \warning In order to avoid deadlock every recv must be coupled with a send
     *          in case you want to send data without knowledge from the other side
     *          consider to use sendRecvMultipleMessages
     *
     * \warning operation is asynchronous execute must be called to ensure they are executed
     *
     * \see sendRecvMultipleMessages
     *
     * \param proc processor id
     * \param tag id
     * \param v vector to send
     *
     * \return true if succeed false otherwise
     *
     */
    template<typename T, typename Mem, typename gr> bool recv(size_t proc, size_t tag, openfpm::vector<T,Mem,gr> & v)
    {
#ifdef DEBUG
            checkType<T>();
#endif

            // recv over MPI

            // Create one request
            req.add();

            // receive
            MPI_IrecvW<T>::recv(proc,SEND_RECV_BASE + tag,v,req.last());

            return true;
    }

	/*! \brief Gather the data from all processors
incardon's avatar
incardon committed
862 863 864 865
	 *
	 * \warning operation is asynchronous execute must be called to ensure they are executed
	 *
	 * \param tag id
incardon's avatar
incardon committed
866 867
	 * \param v vector to receive
	 * \param send data to send
868
	 *
869 870
	 * \return true if succeed false otherwise
	 *
871
	 */
incardon's avatar
incardon committed
872
	template<typename T, typename Mem, typename gr> bool allGather(T & send, openfpm::vector<T,Mem,gr> & v)
873 874 875 876 877 878 879 880
	{
#ifdef DEBUG
		checkType<T>();
#endif

		// Create one request
		req.add();

incardon's avatar
incardon committed
881 882 883
		// Number of processors
		v.resize(getProcessingUnits());

884
		// receive
incardon's avatar
incardon committed
885
		MPI_IAllGatherW<T>::gather(&send,1,v.getPointer(),1,req.last());
886 887

		return true;
888 889 890
	}

	/*! \brief Execute all the requests
incardon's avatar
incardon committed
891 892 893 894 895 896
	 *
	 */
	void execute()
	{
		int err = 0;

897 898 899 900
		// if req == 0 return
		if (req.size() == 0)
			return;

incardon's avatar
incardon committed
901
		// Wait for all the requests
902
		stat.resize(req.size());
incardon's avatar
incardon committed
903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920
		err = MPI_Waitall(req.size(),&req.get(0),&stat.get(0));

		// MPI error get the message and abort MPI
		if (err != MPI_SUCCESS)
		{
			char * error_msg = NULL;
			int len;
			MPI_Error_string(err,error_msg,&len);

			std::cerr << "Error MPI rank " << rank << ": " << error_msg << "\n";

			MPI_Abort(MPI_COMM_WORLD,1);
		}

		//! Remove executed request and status
		req.clear();
		stat.clear();
	}
921 922


incardon's avatar
incardon committed
923 924
};

Pietro Incardona's avatar
Pietro Incardona committed
925
// Function to initialize the global VCluster //
incardon's avatar
incardon committed
926 927 928

extern Vcluster * global_v_cluster;

Pietro Incardona's avatar
Pietro Incardona committed
929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946

/*! \brief Initialize a global instance of Runtime Virtual Cluster Machine
 *
 * Initialize a global instance of Runtime Virtual Cluster Machine
 *
 */

static void init_global_v_cluster(int *argc, char ***argv)
{
	if (global_v_cluster == NULL)
		global_v_cluster = new Vcluster(argc,argv);
}

static void delete_global_v_cluster()
{
	delete global_v_cluster;
}

incardon's avatar
incardon committed
947 948
#endif