#! /bin/bash # Make a directory in /tmp/OpenFPM_data echo "Directory: $1" echo "Machine: $2" mkdir /tmp/openfpm_vcluster mv * .[^.]* /tmp/openfpm_vcluster mv /tmp/openfpm_vcluster OpenFPM_vcluster mkdir OpenFPM_vcluster/src/config git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_devices.git OpenFPM_devices git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_data.git OpenFPM_data cd "$1/OpenFPM_vcluster" if [ "$2" == "gin" ] then echo "Compiling on gin\n" module load gcc/4.9.2 module load openmpi/1.8.1 elif [ "$2" == "wetcluster" ] then echo "Compiling on wetcluster" ## produce the module path export MODULEPATH="/sw/apps/modules/modulefiles:$MODULEPATH" script="module load gcc/4.9.2\n module load openmpi/1.8.1\n module load boost/1.54.0\n compile_options='--with-boost=/sw/apps/boost/1.54.0/'\n \n sh ./autogen.sh\n sh ./configure \"\$compile_options\" CXX=mpic++\n make\n if [ \"\$?\" = "0" ]; then exit 1 ; fi\n exit(0)\n" echo $script | sed -r 's/\\n/\n/g' > compile_script bsub -o output_compile.%J -K -n 1 -J compile sh ./compile_script ## Run on the cluster bsub -o output_run2.%J -K -n 2 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 2 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run4.%J -K -n 4 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 4 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run8.%J -K -n 8 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 8 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run16.%J -K -n 16 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 16 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 32 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 64 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 128 ./src/vcluster" if [ $? -ne 0 ]; then exit 1 ; fi elif [ "$2" == "taurus" ] then echo "Compiling on taurus" echo "$PATH" module load boost/1.57.0-intel2013-sp1 module load intel/2015.2.164 module load gcc/4.8.2 module load openmpi/1.8.5 sh ./autogen.sh sh ./configure CXX=mpic++ make if [ $? -ne 0 ]; then exit 1 ; fi script="#!/bin/bash\n \n module load openmpi/1.8.5\n module load gcc/4.8.2\n ulimit -l unlimited\n ulimit -s unlimited\n /sw/taurus/libraries/openmpi/1.8.5/bin/mpirun -np 16 src/vcluster\n" echo $script | sed -r 's/\\n/\n/g' > run_script chmod a+x run_script srun --nodes=1 --ntasks-per-node=16 --time=04:00:00 --mem-per-cpu=1900 --partition=sandy run_script if [ $? -ne 0 ]; then exit 1 ; fi # srun --nodes=2 --ntasks-per-node=16 --time=04:00:00 --mem-per-cpu=1900 --partition=sandy run_script # if [ $? -ne 0 ]; then exit 1 ; fi # srun --nodes=4 --ntasks-per-node=16 --time=04:00:00 --mem-per-cpu=1900 --partition=sandy run_script # if [ $? -ne 0 ]; then exit 1 ; fi # srun --nodes=8 --nstaks-per-node=16 --time=04:00:00 --mem-per-cpu=1900 --partition=sansy run_script # if [ $? -ne 0 ]; then exit 1 ; fi # srun --nodes=16 --nstaks-per-node=16 --time=04:00:00 --mem-per-cpu=1900 --partition=sansy run_script # if [ $? -ne 0 ]; then exit 1 ; fi else echo "Compiling general" sh ./autogen.sh\n sh ./configure CXX=mpic++ make mpirun -np 2 ./src/vcluster mpirun -np 4 ./src/vcluster fi