Commit 1fdaace8 authored by incardon's avatar incardon

Adding configure and install MPI script

parent 31be4d59
#!/bin/sh
# configure script
#
#
# Because we moved to cmake this script emulate the configure script from autotools
conf_options=
# Avoid depending upon Character Ranges.
as_cr_letters='abcdefghijklmnopqrstuvwxyz'
as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
as_cr_Letters=$as_cr_letters$as_cr_LETTERS
as_cr_digits='0123456789'
as_cr_alnum=$as_cr_Letters$as_cr_digits
# as_fn_error STATUS ERROR [LINENO LOG_FD]
# ----------------------------------------
# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
# script with STATUS, using 1 if that was 0.
as_fn_error ()
{
as_status=$1; test $as_status -eq 0 && as_status=1
if test "$4"; then
as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
$as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
fi
$as_echo "$as_me: error: $2" >&2
as_fn_exit $as_status
} # as_fn_error
# as_fn_exit STATUS
# -----------------
# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
as_fn_exit ()
{
set +e
as_fn_set_status $1
exit $1
} # as_fn_exit
# as_fn_set_status STATUS
# -----------------------
# Set $? to STATUS, without forking.
as_fn_set_status ()
{
return $1
} # as_fn_set_status
# Printing a long string crashes Solaris 7 /usr/bin/printf.
as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
# Prefer a ksh shell builtin over an external printf program on Solaris,
# but without wasting forks for bash or zsh.
if test -z "$BASH_VERSION$ZSH_VERSION" \
&& (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='print -r --'
as_echo_n='print -rn --'
elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='printf %s\n'
as_echo_n='printf %s'
else
if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
as_echo_n='/usr/ucb/echo -n'
else
as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
as_echo_n_body='eval
arg=$1;
case $arg in #(
*"$as_nl"*)
expr "X$arg" : "X\\(.*\\)$as_nl";
arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
esac;
expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
'
export as_echo_n_body
as_echo_n='sh -c $as_echo_n_body as_echo'
fi
export as_echo_body
as_echo='sh -c $as_echo_body as_echo'
fi
ac_user_opts='
enable_option_checking
enable_silent_rules
enable_shared
enable_static
with_pic
enable_fast_install
with_aix_soname
enable_dependency_tracking
with_gnu_ld
with_sysroot
enable_libtool_lock
enable_debug
with_metis
with_hdf5
with_libhilbert
enable_scan_coverty
enable_test_performance
enable_test_coverage
with_parmetis
enable_se_class1
enable_se_class2
enable_se_class3
with_action_on_error
with_boost
with_boost_libdir
with_boost_unit_test_framework
with_boost_program_options
with_boost_iostreams
with_blas
with_lapack
with_suitesparse
with_petsc
with_eigen
enable_gpu
'
rm -rf build
if [ ! -d "build" ]; then
mkdir build
fi
##### Go over all options
for ac_option
do
# If the previous option needs an argument, assign it.
if test -n "$ac_prev"; then
eval $ac_prev=\$ac_option
ac_prev=
continue
fi
case $ac_option in
*=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
*=) ac_optarg= ;;
*) ac_optarg=yes ;;
esac
# Accept the important Cygnus configure options, so we can diagnose typos.
case $ac_dashdash$ac_option in
--)
ac_dashdash=yes ;;
-bindir | --bindir | --bindi | --bind | --bin | --bi)
ac_prev=bindir ;;
-bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*)
bindir=$ac_optarg ;;
-build | --build | --buil | --bui | --bu)
ac_prev=build_alias ;;
-build=* | --build=* | --buil=* | --bui=* | --bu=*)
build_alias=$ac_optarg ;;
-cache-file | --cache-file | --cache-fil | --cache-fi \
| --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
ac_prev=cache_file ;;
-cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
| --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*)
cache_file=$ac_optarg ;;
--config-cache | -C)
cache_file=config.cache ;;
-datadir | --datadir | --datadi | --datad)
ac_prev=datadir ;;
-datadir=* | --datadir=* | --datadi=* | --datad=*)
datadir=$ac_optarg ;;
-datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
| --dataroo | --dataro | --datar)
ac_prev=datarootdir ;;
-datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
| --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
datarootdir=$ac_optarg ;;
-disable-* | --disable-*)
ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_useropt in
gpu)
conf_options="$conf_options -DENABLE_GPU=OFF"
;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--disable-$ac_useropt_orig"
ac_unrecognized_sep=', ';;
esac
eval enable_$ac_useropt=no ;;
-docdir | --docdir | --docdi | --doc | --do)
ac_prev=docdir ;;
-docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
docdir=$ac_optarg ;;
-dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
ac_prev=dvidir ;;
-dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
dvidir=$ac_optarg ;;
-enable-* | --enable-*)
ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_useropt in
debug)
conf_options="$conf_options -DCMAKE_BUILD_TYPE=Debug"
debug_mode=1
;;
se_class1)
conf_options="$conf_options -DSE_CLASS1=ON"
;;
se_class2)
conf_options="$conf_options -DSE_CLASS2=ON"
;;
se_class3)
conf_options="$conf_options -DSE_CLASS3=ON"
;;
gpu)
conf_options="$conf_options -DENABLE_GPU=ON"
;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--enable-$ac_useropt_orig"
ac_unrecognized_sep=', '
;;
esac
eval enable_$ac_useropt=\$ac_optarg ;;
-exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
| --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
| --exec | --exe | --ex)
ac_prev=exec_prefix ;;
-exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \
| --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \
| --exec=* | --exe=* | --ex=*)
exec_prefix=$ac_optarg ;;
-gas | --gas | --ga | --g)
# Obsolete; use --with-gas.
with_gas=yes ;;
-help | --help | --hel | --he | -h)
ac_init_help=long ;;
-help=r* | --help=r* | --hel=r* | --he=r* | -hr*)
ac_init_help=recursive ;;
-help=s* | --help=s* | --hel=s* | --he=s* | -hs*)
ac_init_help=short ;;
-host | --host | --hos | --ho)
ac_prev=host_alias ;;
-host=* | --host=* | --hos=* | --ho=*)
host_alias=$ac_optarg ;;
-htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
ac_prev=htmldir ;;
-htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
| --ht=*)
htmldir=$ac_optarg ;;
-includedir | --includedir | --includedi | --included | --include \
| --includ | --inclu | --incl | --inc)
ac_prev=includedir ;;
-includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \
| --includ=* | --inclu=* | --incl=* | --inc=*)
includedir=$ac_optarg ;;
-infodir | --infodir | --infodi | --infod | --info | --inf)
ac_prev=infodir ;;
-infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*)
infodir=$ac_optarg ;;
-libdir | --libdir | --libdi | --libd)
ac_prev=libdir ;;
-libdir=* | --libdir=* | --libdi=* | --libd=*)
libdir=$ac_optarg ;;
-libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \
| --libexe | --libex | --libe)
ac_prev=libexecdir ;;
-libexecdir=* | --libexecdir=* | --libexecdi=* | --libexecd=* | --libexec=* \
| --libexe=* | --libex=* | --libe=*)
libexecdir=$ac_optarg ;;
-localedir | --localedir | --localedi | --localed | --locale)
ac_prev=localedir ;;
-localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
localedir=$ac_optarg ;;
-localstatedir | --localstatedir | --localstatedi | --localstated \
| --localstate | --localstat | --localsta | --localst | --locals)
ac_prev=localstatedir ;;
-localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
| --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
localstatedir=$ac_optarg ;;
-mandir | --mandir | --mandi | --mand | --man | --ma | --m)
ac_prev=mandir ;;
-mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)
mandir=$ac_optarg ;;
-nfp | --nfp | --nf)
# Obsolete; use --without-fp.
with_fp=no ;;
-no-create | --no-create | --no-creat | --no-crea | --no-cre \
| --no-cr | --no-c | -n)
no_create=yes ;;
-no-recursion | --no-recursion | --no-recursio | --no-recursi \
| --no-recurs | --no-recur | --no-recu | --no-rec | --no-re | --no-r)
no_recursion=yes ;;
-oldincludedir | --oldincludedir | --oldincludedi | --oldincluded \
| --oldinclude | --oldinclud | --oldinclu | --oldincl | --oldinc \
| --oldin | --oldi | --old | --ol | --o)
ac_prev=oldincludedir ;;
-oldincludedir=* | --oldincludedir=* | --oldincludedi=* | --oldincluded=* \
| --oldinclude=* | --oldinclud=* | --oldinclu=* | --oldincl=* | --oldinc=* \
| --oldin=* | --oldi=* | --old=* | --ol=* | --o=*)
oldincludedir=$ac_optarg ;;
-prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
ac_prev=prefix ;;
-prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*)
prefix=$ac_optarg
conf_options="$conf_options -DCMAKE_INSTALL_PREFIX=$ac_optarg"
echo "$prefix" > install_dir
;;
-program-prefix | --program-prefix | --program-prefi | --program-pref \
| --program-pre | --program-pr | --program-p)
ac_prev=program_prefix ;;
-program-prefix=* | --program-prefix=* | --program-prefi=* \
| --program-pref=* | --program-pre=* | --program-pr=* | --program-p=*)
program_prefix=$ac_optarg ;;
-program-suffix | --program-suffix | --program-suffi | --program-suff \
| --program-suf | --program-su | --program-s)
ac_prev=program_suffix ;;
-program-suffix=* | --program-suffix=* | --program-suffi=* \
| --program-suff=* | --program-suf=* | --program-su=* | --program-s=*)
program_suffix=$ac_optarg ;;
-program-transform-name | --program-transform-name \
| --program-transform-nam | --program-transform-na \
| --program-transform-n | --program-transform- \
| --program-transform | --program-transfor \
| --program-transfo | --program-transf \
| --program-trans | --program-tran \
| --progr-tra | --program-tr | --program-t)
ac_prev=program_transform_name ;;
-program-transform-name=* | --program-transform-name=* \
| --program-transform-nam=* | --program-transform-na=* \
| --program-transform-n=* | --program-transform-=* \
| --program-transform=* | --program-transfor=* \
| --program-transfo=* | --program-transf=* \
| --program-trans=* | --program-tran=* \
| --progr-tra=* | --program-tr=* | --program-t=*)
program_transform_name=$ac_optarg ;;
-pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
ac_prev=pdfdir ;;
-pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
pdfdir=$ac_optarg ;;
-psdir | --psdir | --psdi | --psd | --ps)
ac_prev=psdir ;;
-psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
psdir=$ac_optarg ;;
-q | -quiet | --quiet | --quie | --qui | --qu | --q \
| -silent | --silent | --silen | --sile | --sil)
silent=yes ;;
-sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb)
ac_prev=sbindir ;;
-sbindir=* | --sbindir=* | --sbindi=* | --sbind=* | --sbin=* \
| --sbi=* | --sb=*)
sbindir=$ac_optarg ;;
-sharedstatedir | --sharedstatedir | --sharedstatedi \
| --sharedstated | --sharedstate | --sharedstat | --sharedsta \
| --sharedst | --shareds | --shared | --share | --shar \
| --sha | --sh)
ac_prev=sharedstatedir ;;
-sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \
| --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \
| --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \
| --sha=* | --sh=*)
sharedstatedir=$ac_optarg ;;
-site | --site | --sit)
ac_prev=site ;;
-site=* | --site=* | --sit=*)
site=$ac_optarg ;;
-srcdir | --srcdir | --srcdi | --srcd | --src | --sr)
ac_prev=srcdir ;;
-srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*)
srcdir=$ac_optarg ;;
-sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \
| --syscon | --sysco | --sysc | --sys | --sy)
ac_prev=sysconfdir ;;
-sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \
| --syscon=* | --sysco=* | --sysc=* | --sys=* | --sy=*)
sysconfdir=$ac_optarg ;;
-target | --target | --targe | --targ | --tar | --ta | --t)
ac_prev=target_alias ;;
-target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*)
target_alias=$ac_optarg ;;
-v | -verbose | --verbose | --verbos | --verbo | --verb)
verbose=yes ;;
-version | --version | --versio | --versi | --vers | -V)
ac_init_version=: ;;
-with-* | --with-*)
ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_useropt in
libhilbert)
conf_options="$conf_options -DLIBHILBERT_ROOT=$ac_optarg"
;;
metis)
conf_options="$conf_options -DMETIS_ROOT=$ac_optarg"
;;
parmetis)
conf_options="$conf_options -DPARMETIS_ROOT=$ac_optarg"
;;
hdf5)
conf_options="$conf_options -DHDF5_ROOT=$ac_optarg"
;;
petsc)
conf_options="$conf_options -DPETSC_ROOT=$ac_optarg"
;;
blas)
conf_options="$conf_options -DOPENBLAS_ROOT=$ac_optarg"
;;
suitesparse)
conf_options="$conf_options -DSUITESPARSE_ROOT=$ac_optarg"
;;
eigen)
conf_options="$conf_options -DEIGEN3_ROOT=$ac_optarg"
;;
boost)
conf_options="$conf_options -DBOOST_ROOT=$ac_optarg"
;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--with-$ac_useropt_orig"
ac_unrecognized_sep=', ';;
esac
eval with_$ac_useropt=\$ac_optarg ;;
-without-* | --without-*)
ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
*"
"with_$ac_useropt"
"*) ;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--without-$ac_useropt_orig"
ac_unrecognized_sep=', ';;
esac
eval with_$ac_useropt=no ;;
--x)
# Obsolete; use --with-x.
with_x=yes ;;
-x-includes | --x-includes | --x-include | --x-includ | --x-inclu \
| --x-incl | --x-inc | --x-in | --x-i)
ac_prev=x_includes ;;
-x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \
| --x-incl=* | --x-inc=* | --x-in=* | --x-i=*)
x_includes=$ac_optarg ;;
-x-libraries | --x-libraries | --x-librarie | --x-librari \
| --x-librar | --x-libra | --x-libr | --x-lib | --x-li | --x-l)
ac_prev=x_libraries ;;
-x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \
| --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
x_libraries=$ac_optarg ;;
-*) as_fn_error $? "unrecognized option: \`$ac_option'
Try \`$0 --help' for more information"
;;
*=*)
ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
# Reject names that are not valid shell variable names.
case $ac_envvar in #(
'' | [0-9]* | *[!_$as_cr_alnum]* )
as_fn_error $? "invalid variable name: \`$ac_envvar'" ;;
esac
eval $ac_envvar=\$ac_optarg
export $ac_envvar ;;
*)
# FIXME: should be removed in autoconf 3.0.
$as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2
expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
$as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
: "${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}"
;;
esac
done
if [ x"$debug_mode" != x"1" ]; then
conf_options="$conf_options -DCMAKE_BUILD_TYPE=Release"
fi
cd build
## remove enerything
echo "Calling cmake ../. $conf_options"
rm ../error_code
cmake ../. $conf_options
if [ $? != 0 ]; then
#ok something went wrong the install script analyze the return code to potentially fix the problem automatically
# Read the error code and exit with that
if [ -f ../error_code ]; then
ecod=$(cat ../error_code)
if [ x"$ecod" == x"0" ]; then
exit 1
else
echo "Analyze error $ecod"
exit $ecod
fi
else
exit 1
fi
fi
cd ..
echo "all:
\$(MAKE) -C build \$@
clean:
\$(MAKE) -C build \$@
install:
\$(MAKE) -C build \$@
.PHONY: all clean install" > Makefile
echo "$0 $@" > config.log
#!/bin/bash
mkdir ${HOME}/MPI
wget http://www.open-mpi.de/software/ompi/v1.8/downloads/openmpi-1.8.7.tar.bz2
tar -xvf openmpi-1.8.7.tar.bz2
cd openmpi-1.8.7
sh ./configure --prefix=${HOME}/MPI --enable-opal-multi-threads --enable-mpi-f90
make
#!/bin/bash
# check if the directory $1/MPI exist
if [ -d "$1/MPI" ]; then
echo "MPI already installed"
exit 0
fi
rm -rf openmpi-3.1.1
rm openmpi-3.1.1.tar.gz
wget http://ppmcore.mpi-cbg.de/upload/openmpi-3.1.1.tar.gz
tar -xvf openmpi-3.1.1.tar.gz
cd openmpi-3.1.1
#
# --disable-mca-dso \
# --disable-sysv-shmem \
# --enable-cxx-exceptions \
# --with-threads=posix \
# --without-cs-fs \
# --with-mpi-param_check=always \
# --enable-contrib-no-build=vt,libompitrace \
#
#--enable-mca-no-build=paffinity,installdirs-windows,timer-windows,shmem-sysv
#
#
if [ x"$6" == x"1" ]; then
echo "Installing MPI with GPU support"
./configure --with-cuda --prefix=$1/MPI --enable-mpi-fortran=yes CC=$3 CXX=$4 F77=$5 FC=$5
else
echo "Installing MPI without GPU support"
./configure --prefix=$1/MPI --enable-mpi-fortran=yes CC=$3 CXX=$4 F77=$5 FC=$5
fi
make -j $2
make install
# Mark the installation
echo 3 > $1/MPI/version
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