# Image Analysis Course (3days) This repo contains the slides of the **3 day course on image analysis which was given by the CBG Scientific Computing Facility(SCF) / Scionics online in 2020-12.** Software for hands-on sessions: Fiji and Ilastik. For course material of our other courses + further resources check [here](https://git.mpi-cbg.de/scicomp/bioimage_team/coursematerialimageanalysis). ### Course overview * Day 1: Introduction to image analysis * Image basics: What is an image, visualization, histograms, measurements * Counting objects (spot detection) * Segmentation 1: classic segmentation pipeline * Day 2: Image segmentation (continued) * Image filters, morphological operations * Segmentation 2: pixel classification (machine learning) * 3D data & visualization * Good practices * Day 3: ImageJ / Fiji Automation and Macro Language * ImageJ macro language basics * Processing an image with a macro * Batch processing ### License The content of this repository is licensed under Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC). To view a copy of this license, visit .