# Image Analysis Course (3days)

This repo contains the slides of the **3 day course on image analysis which was given by the CBG Scientific Computing Facility(SCF) / Scionics online in 2020-12.**

Software for hands-on sessions: Fiji and Ilastik.

For course material of our other courses + further resources check [here](https://git.mpi-cbg.de/scicomp/bioimage_team/coursematerialimageanalysis).

### Course overview

* Day 1: Introduction to image analysis
	* Image basics: What is an image, visualization, histograms, measurements
	* Counting objects (spot detection)
	* Segmentation 1: classic segmentation pipeline
* Day 2: Image segmentation (continued)
	* Image filters, morphological operations
	* Segmentation 2: pixel classification (machine learning)
	* 3D data & visualization
	* Good practices
* Day 3: ImageJ / Fiji Automation and Macro Language
	* ImageJ macro language basics
	* Processing an image with a macro
	* Batch processing

### License
The content of this repository is licensed under Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC). To view a copy of this license, visit <http://creativecommons.org/licenses/by-nc/4.0/>.