Commit 73c8850f authored by Lena Hersemann's avatar Lena Hersemann
Browse files

updated enrichment analysis information

parent f3ecbac4
......@@ -121,7 +121,8 @@ rend.R -e ${NGS_TOOLS}/dge_workflow/featcounts_deseq_mf.R --lfc 0 --qcutoff 0.01
## perform enrichment analysis
mcdir ${PRJ_DATA}/final/dge_analysis/enrichment_analysis
rend.R -e ${NGS_TOOLS}/common/cp_enrichment.R --overlay_expr_data ../plot_score_matrix.txt ../degs_by_contrast_directed.txt contrast
## perform gene set enrichment analysis of MSigDB C5 collection
mcdir ${PRJ_DATA}/dge_analysis/gsea_C5_go_terms
rend.R -e --toc ${NGS_TOOLS}/dge_workflow/gsea.R --species "Homo sapiens" --category "C5" ../de_results.txt
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