Commit 032639ad authored by Lena Hersemann's avatar Lena Hersemann

Merge remote-tracking branch 'origin/master'

parents 6a2c1c1c 114fade9
......@@ -48,4 +48,7 @@ References
==========
- http://www.bioconductor.org/help/workflows/rnaseqGene/
- https://github.com/nunofonseca/irap (and corresponding [biorXiv](https://www.biorxiv.org/content/early/2014/06/06/005991) paper)
- https://github.com/mlesche/dsp RNA-seq workflow of [Deep Sequencing](http://www.biotec.tu-dresden.de/technology-platform/deep-sequencing.html) group at CRTD
......@@ -59,7 +59,7 @@ fi
# R --args $gtfFile ${outputDir}/*.markdup.bam
# ll $gtfFile ${outputDir}/*.markdup.bam
rendr_snippet "duplicate_anlysis" <<"EOF" $gtfFile ${outputDir}/*.markdup.bam
rendr_snippet "duplicate_analysis" <<"EOF" $gtfFile ${outputDir}/*.markdup.bam
#' # Assess PCR duplicates in RNA-Seq
#'
#' ## Introduction
......@@ -162,5 +162,5 @@ sumStats = map2_df(bamFiles, dupResults, ~ getDupMatStats(DupMat = .y) %>%
dupStats = modelStats %>% inner_join(sumStats)
dupStats %>% table_browser()
write_tsv(dupStats, path = "duplicate_anlysis.summary_stats.tsv")
write_tsv(dupStats, path = "duplicate_analysis.summary_stats.tsv")
EOF
\ No newline at end of file
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