Commit 1fa78d9e authored by Holger Brandl's avatar Holger Brandl

changed holger to brandl in furiosa paths

parent b182e3a7
......@@ -6,7 +6,7 @@ export project=<<PROJECTNAME>>
## madmax
if [ -n "$LSF_SERVERDIR" ]; then
export baseDir="/projects/bioinfo/holger/projects/${project}"
export PROJECT_SCRIPTS="/projects/bioinfo/holger/scripts/${project}"
export PROJECT_SCRIPTS="/projects/bioinfo/brandl/scripts/${project}"
export NGS_TOOLS="/projects/bioinfo/scripts/ngs_tools/v1.1"
fi
......
......@@ -57,6 +57,13 @@ mv bedtools2 bedtools2-2.25.0
cd bedtools2-2.25.0
make
cd ~/bin
wget https://github.com/arq5x/bedtools2/releases/download/v2.25.0/bedtools-2.25.0.tar.gz
tar -zxvf bedtools-2.25.0.tar.gz
cd bedtools2
make
## samtools
cd ~/bin
......@@ -195,7 +202,7 @@ wget -O picard_tools/picard_v${picardVersion}.jar -N https://github.com/broadins
cd /projects/bioinfo/igenomes
#export NGS_TOOLS=/net/mack/lustre/projects/bioinfo/holger/scripts/ngs_tools/
#export NGS_TOOLS=/net/mack/lustre/projects/bioinfo/brandl/scripts/ngs_tools/
export NGS_TOOLS=/projects/bioinfo/scripts/ngs_tools/dev
source ${NGS_TOOLS}/dge_workflow/dge_utils.sh
source <(curl https://raw.githubusercontent.com/holgerbrandl/datautils/v1.38/bash/core_utils.sh 2>&1 2>/dev/null)
......
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