Commit d3877b01 authored by Lena Hersemann's avatar Lena Hersemann

added dge_analyze_duplicates.sh

parent 4827ca27
......@@ -10,7 +10,7 @@ if [ "$HOSTNAME"=="falcon1" ]; then
export NGS_TOOLS="/projects/bioinfo/$(whoami)/scripts/ngs_tools"
## TODO define igenome to be used
## IGENOME=/projects/bioinfo/igenomes/Canis_familiaris/Ensembl/CanFam3.1
## export IGENOME=/projects/bioinfo/igenomes/Canis_familiaris/Ensembl/CanFam3.1
fi
## bioinfo
......@@ -100,6 +100,7 @@ mcdir ${PRJ_DATA}/alignments
star_align.kts ${IGENOME} $(ls ${PRJ_DATA}/lanereps_pooled/*.fastq.gz) 2>&1 | tee star_algin.log
dge_bam_correlate $(ls *.bam)
dge_analyze_duplicates.sh $(ls *.bam)
mailme "${PRJ_NAME}: mapping done"
......
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