Commit fb6ff9b9 authored by Holger Brandl's avatar Holger Brandl

added moods and custom java to setup

parent 45bd2866
......@@ -330,4 +330,29 @@ make
## or fetch existing build
wget https://github.com/pachterlab/kallisto/releases/download/v0.43.1/kallisto_linux-v0.43.1.tar.gz
tar xvf kallisto_linux-v0.43.1.tar.gz
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tar xvf kallisto_linux-v0.43.1.tar.gz
########################################################################################################################
## Moods
## see https://github.com/jhkorhonen/MOODS/wiki/Installation
cd ~/bin
wget --no-check-certificate https://github.com/jhkorhonen/MOODS/releases/download/v1.9.3/MOODS-python-1.9.3.tar.gz
tar xzvf MOODS-python-1.9.3.tar.gz
cd MOODS-python-1.9.3
#python setup.py build_ext --inplace
python setup.py install --user
#####
#custm java installation
cd ~/bin
## does not work
#wget http://download.oracle.com/otn-pub/java/jdk/8u144-b01/090f390dda5b47b9b721c7dfaa008135/jdk-8u144-linux-x64.tar.gz
tar xvf jdk-8u144-linux-x64.tar.gz
cd jdk1.8.0_144
bin/java -help
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