Make IJ2 plugin, rename

README.md

@@ -20,5 +20,5 @@ maven to build and install it:
 
     mvn install
 
-The entry-point for the plugin is the [OvariesPlugIn](src/main/java/de/mpicbg/ovaries/OvariesPlugIn.java) class.
+The entry-point for the plugin is the [OvariesProjectionPlugin](src/main/java/de/mpicbg/ovaries/OvariesProjectionPlugin.java) class.
 

src/main/java/de/mpicbg/ovaries/OvariesPlugIn.java → src/main/java/de/mpicbg/ovaries/OvariesProjectionPlugin.java

@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -41,6 +41,8 @@ import javax.swing.JMenuBar;
 import javax.swing.JMenuItem;
 import javax.swing.filechooser.FileFilter;
 
+import org.scijava.command.Command;
+import org.scijava.plugin.Plugin;
 import org.scijava.ui.behaviour.io.InputTriggerConfig;
 import org.scijava.ui.behaviour.util.Actions;
 
@@ -53,15 +55,16 @@ import bdv.viewer.ViewerOptions;
 import bdv.viewer.ViewerPanel;
 import ij.ImageJ;
 import ij.Prefs;
-import ij.plugin.PlugIn;
 import mpicbg.spim.data.SpimDataException;
 
-public class OvariesPlugIn implements PlugIn
+@Plugin(type = Command.class,
+menuPath = "Plugins>BigDataViewer>Ellipsoid Surface Projection")
+public class OvariesProjectionPlugin implements Command
 {
-	static String lastDatasetPath = "/Users/pietzsch/Dropbox/data/ivana/S7/export.xml";
+	static String lastDatasetPath = "";
 
 	@Override
-	public void run( final String arg )
+	public void run()
 	{
 		File file = null;
 
@@ -196,6 +199,6 @@ public class OvariesPlugIn implements PlugIn
 	public static void main( final String[] args )
 	{
 		ImageJ.main( args );
-		new OvariesPlugIn().run( null );
+		new OvariesProjectionPlugin().run();
 	}
 }

src/main/resources/plugins.config

-# Name: Ellipsoid Surface Projection
-# Author: Tobias Pietzsch
-# Version: 1.0.0
-
-# A single .jar file can contain multiple plugins, specified in separate lines.
-#
-# The format is: <menu>, "<menu label>", <class name>
-#
-# If something like ("<arg>") is appended to the class name, the setup() method
-# will get that as arg parameter; otherwise arg is simply the empty string.
-
-Plugins>BigDataViewer, "Ovary Surface Projection", de.mpicbg.ovaries.OvariesPlugIn