diff --git a/src/FiniteDifference/FDScheme.hpp b/src/FiniteDifference/FDScheme.hpp index 9f50ef2e1f6a4f7e9a9a9069d88ed9080f1c946c..75718266fabbd864b8236bdc360cbafb4c5126a2 100644 --- a/src/FiniteDifference/FDScheme.hpp +++ b/src/FiniteDifference/FDScheme.hpp @@ -12,7 +12,6 @@ #include "Grid/grid_dist_id.hpp" #include "Grid/Iterators/grid_dist_id_iterator_sub.hpp" #include "eq.hpp" -#include "data_type/scalar.hpp" #include "NN/CellList/CellDecomposer.hpp" #include "Grid/staggered_dist_grid_util.hpp" #include "Grid/grid_dist_id.hpp" @@ -127,7 +126,7 @@ class FDScheme public: //! Distributed grid map - typedef grid_dist_id<Sys_eqs::dims,typename Sys_eqs::stype,scalar<size_t>,typename Sys_eqs::b_grid::decomposition::extended_type> g_map_type; + typedef grid_dist_id<Sys_eqs::dims,typename Sys_eqs::stype,aggregate<size_t>,typename Sys_eqs::b_grid::decomposition::extended_type> g_map_type; //! Type that specify the properties of the system of equations typedef Sys_eqs Sys_eqs_typ; diff --git a/src/FiniteDifference/FDScheme_unit_tests.hpp b/src/FiniteDifference/FDScheme_unit_tests.hpp index 83dd6f93b461b49491c2c604e510e529f59d3fb5..43cc916b127a2a1cc20a09c519d1967dfbe06bcc 100644 --- a/src/FiniteDifference/FDScheme_unit_tests.hpp +++ b/src/FiniteDifference/FDScheme_unit_tests.hpp @@ -37,7 +37,7 @@ struct sys_nn typedef float stype; //! Base grid - typedef grid_dist_id<dims,stype,scalar<float>,CartDecomposition<2,stype> > b_grid; + typedef grid_dist_id<dims,stype,aggregate<float>,CartDecomposition<2,stype> > b_grid; //! specify that we are on testing typedef void testing; @@ -60,7 +60,7 @@ struct sys_pp typedef float stype; //! Base grid - typedef grid_dist_id<dims,stype,scalar<float>,CartDecomposition<2,stype> > b_grid; + typedef grid_dist_id<dims,stype,aggregate<float>,CartDecomposition<2,stype> > b_grid; //! Indicate we are on testing typedef void testing; @@ -89,7 +89,7 @@ struct syss_nn typedef float stype; //! Base grid - typedef grid_dist_id<dims,stype,scalar<float>,CartDecomposition<2,stype> > b_grid; + typedef grid_dist_id<dims,stype,aggregate<float>,CartDecomposition<2,stype> > b_grid; //! Indicate we are on testing typedef void testing; @@ -115,7 +115,7 @@ struct syss_pp typedef float stype; //! Base grid - typedef grid_dist_id<dims,stype,scalar<float>,CartDecomposition<2,stype> > b_grid; + typedef grid_dist_id<dims,stype,aggregate<float>,CartDecomposition<2,stype> > b_grid; //! Indicate we are on testing typedef void testing; diff --git a/src/FiniteDifference/eq.hpp b/src/FiniteDifference/eq.hpp index 183437eaa10886810e95e17dcf92b25da20d7ec8..e14175116e24ec92d19b56152c7d497b7c4365f6 100644 --- a/src/FiniteDifference/eq.hpp +++ b/src/FiniteDifference/eq.hpp @@ -14,7 +14,6 @@ //#define PERIODIC true //#define NON_PERIODIC false -#include "data_type/scalar.hpp" #include "util/util_num.hpp" /*! \brief Equation diff --git a/src/FiniteDifference/eq_unit_test.hpp b/src/FiniteDifference/eq_unit_test.hpp index 97af1306e54909f700ff2bdf48586b216b1a4ce3..099c3da423e80a9da93c11fd667a35896d24dcce 100644 --- a/src/FiniteDifference/eq_unit_test.hpp +++ b/src/FiniteDifference/eq_unit_test.hpp @@ -13,7 +13,6 @@ #include "FiniteDifference/sum.hpp" #include "FiniteDifference/mul.hpp" #include "Grid/grid_dist_id.hpp" -#include "data_type/scalar.hpp" #include "Decomposition/CartDecomposition.hpp" #include "Vector/Vector.hpp" #include "Solvers/umfpack_solver.hpp" diff --git a/src/FiniteDifference/eq_unit_test_3d.hpp b/src/FiniteDifference/eq_unit_test_3d.hpp index 368483b9a403670e2df6275568441fdf4c8d7073..26f6ad250fcc167eb0ed9b1a30ec232deed610b8 100644 --- a/src/FiniteDifference/eq_unit_test_3d.hpp +++ b/src/FiniteDifference/eq_unit_test_3d.hpp @@ -14,7 +14,6 @@ #include "FiniteDifference/sum.hpp" #include "FiniteDifference/mul.hpp" #include "Grid/grid_dist_id.hpp" -#include "data_type/scalar.hpp" #include "Decomposition/CartDecomposition.hpp" #include "Vector/Vector.hpp" #include "Solvers/umfpack_solver.hpp" diff --git a/src/FiniteDifference/mul.hpp b/src/FiniteDifference/mul.hpp index 84d481bf98d8d5581e4a721c9d5c67b8e82bfb7f..84e57f693182dcf7eeece847fc21670ec03ed9d6 100644 --- a/src/FiniteDifference/mul.hpp +++ b/src/FiniteDifference/mul.hpp @@ -55,7 +55,7 @@ struct const_mul_functor_value const grid_sm<last::dims,void> & gs; //! grid mapping - const grid_dist_id<last::dims,typename last::stype,scalar<size_t>,typename last::b_grid::decomposition::extended_type> & g_map; + const grid_dist_id<last::dims,typename last::stype,aggregate<size_t>,typename last::b_grid::decomposition::extended_type> & g_map; //! grid position grid_dist_key_dx<last::dims> & kmap; @@ -76,7 +76,7 @@ struct const_mul_functor_value * \param coeff multiplication coefficent * */ - const_mul_functor_value(const grid_dist_id<last::dims,typename last::stype,scalar<size_t>,typename last::b_grid::decomposition::extended_type> & g_map, + const_mul_functor_value(const grid_dist_id<last::dims,typename last::stype,aggregate<size_t>,typename last::b_grid::decomposition::extended_type> & g_map, grid_dist_key_dx<last::dims> & kmap, const grid_sm<last::dims,void> & gs, typename last::stype (& spacing)[last::dims], @@ -137,7 +137,7 @@ struct mul * \param coeff coefficent (constant in front of the derivative) * */ - inline static void value(const grid_dist_id<Sys_eqs::dims,typename Sys_eqs::stype,scalar<size_t>,typename Sys_eqs::b_grid::decomposition::extended_type> & g_map, + inline static void value(const grid_dist_id<Sys_eqs::dims,typename Sys_eqs::stype,aggregate<size_t>,typename Sys_eqs::b_grid::decomposition::extended_type> & g_map, grid_dist_key_dx<Sys_eqs::dims> & kmap, const grid_sm<Sys_eqs::dims,void> & gs, typename Sys_eqs::stype (& spacing )[Sys_eqs::dims], diff --git a/src/Makefile.am b/src/Makefile.am index 85d21ac694c69054811462d92d99788ea82f226d..5157d0577820a91e98226cf87b26febee3002b24 100755 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -3,7 +3,7 @@ LINKLIBS = $(HDF5_LDFLAGS) $(HDF5_LIBS) $(OPENMP_LDFLAGS) $(LIBHILBERT_LIB) $(P noinst_PROGRAMS = numerics numerics_SOURCES = main.cpp Solvers/petsc_solver_unit_tests.cpp ../../openfpm_vcluster/src/VCluster/VCluster.cpp ../../openfpm_devices/src/memory/HeapMemory.cpp ../../openfpm_devices/src/memory/PtrMemory.cpp ../../openfpm_devices/src/Memleak_check.cpp -numerics_CXXFLAGS = $(HDF5_CPPFLAGS) $(OPENMP_CFLAGS) $(LIBHILBERT_INCLUDE) $(AM_CXXFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) $(SUITESPARSE_INCLUDE) $(METIS_INCLUDE) $(PARMETIS_INCLUDE) $(EIGEN_INCLUDE) $(PETSC_INCLUDE) -Wno-deprecated-declarations -Wno-unused-local-typedefs +numerics_CXXFLAGS = -Wno-unknown-pragmas -Wno-int-in-bool-context $(HDF5_CPPFLAGS) $(OPENMP_CFLAGS) $(LIBHILBERT_INCLUDE) $(AM_CXXFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) $(SUITESPARSE_INCLUDE) $(METIS_INCLUDE) $(PARMETIS_INCLUDE) $(EIGEN_INCLUDE) $(PETSC_INCLUDE) -Wno-deprecated-declarations -Wno-unused-local-typedefs numerics_CFLAGS = $(CUDA_CFLAGS) numerics_LDADD = $(LINKLIBS) -lparmetis -lmetis nobase_include_HEADERS = Matrix/SparseMatrix.hpp Matrix/SparseMatrix_Eigen.hpp Matrix/SparseMatrix_petsc.hpp \ diff --git a/src/interpolation/interpolation.hpp b/src/interpolation/interpolation.hpp index 5b157896791092f730d2d614bdaf616d693dc384..8fd0ca06827ae68409fa40374c3a055cb5355518 100644 --- a/src/interpolation/interpolation.hpp +++ b/src/interpolation/interpolation.hpp @@ -8,7 +8,7 @@ #ifndef OPENFPM_NUMERICS_SRC_INTERPOLATION_INTERPOLATION_HPP_ #define OPENFPM_NUMERICS_SRC_INTERPOLATION_INTERPOLATION_HPP_ -#include "NN/CellList/MemFast.hpp" +#include "NN/Mem_type/MemFast.hpp" #include "NN/CellList/CellList.hpp" #include "Grid/grid_dist_key.hpp" @@ -293,7 +293,7 @@ struct calculate_aint<3,vector,np> */ template<typename vector, typename grid> inline size_t getSub(Point<vector::dims,typename vector::stype> & p, - const CellList<vector::dims,typename vector::stype,Mem_fast,shift<vector::dims,typename vector::stype>> & geo_cell, + const CellList<vector::dims,typename vector::stype,Mem_fast<>,shift<vector::dims,typename vector::stype>> & geo_cell, grid & gd) { size_t cell = geo_cell.getCell(p); @@ -419,7 +419,7 @@ struct inte_calc_impl typename vector::stype (& a)[vector::dims][kernel::np], typename vector::stype (& x)[vector::dims][kernel::np], size_t (& sz)[vector::dims], - const CellList<vector::dims,typename vector::stype,Mem_fast,shift<vector::dims,typename vector::stype>> & geo_cell, + const CellList<vector::dims,typename vector::stype,Mem_fast<>,shift<vector::dims,typename vector::stype>> & geo_cell, openfpm::vector<agg_arr<openfpm::math::pow(kernel::np,vector::dims)>> & offsets) { auto key_p = it.get(); @@ -504,7 +504,7 @@ template<typename vector,typename grid, typename kernel> class interpolate { //! Cell list used to convert particles position to sub-domain - CellList<vector::dims,typename vector::stype,Mem_fast,shift<vector::dims,typename vector::stype>> geo_cell; + CellList<vector::dims,typename vector::stype,Mem_fast<>,shift<vector::dims,typename vector::stype>> geo_cell; /*! Structure to order boxes by volume * diff --git a/src/util/grid_dist_testing.hpp b/src/util/grid_dist_testing.hpp index 13db51486e37af8f6517c1ed0f74c792633162c4..cba4505a2cfdddc24d487db9e964b876ae7cd095 100644 --- a/src/util/grid_dist_testing.hpp +++ b/src/util/grid_dist_testing.hpp @@ -8,13 +8,12 @@ #ifndef OPENFPM_NUMERICS_SRC_UTIL_GRID_DIST_TESTING_HPP_ #define OPENFPM_NUMERICS_SRC_UTIL_GRID_DIST_TESTING_HPP_ -#include "data_type/scalar.hpp" #include "Grid/grid_dist_key.hpp" template<unsigned int dim> class grid_dist_testing { - grid_cpu<dim,scalar<size_t>> grid_test; + grid_cpu<dim,aggregate<size_t>> grid_test; public: diff --git a/src/util/util_num.hpp b/src/util/util_num.hpp index 2e3bbec9d5de2a3c853a5199ea5da6375a474df4..783f380b301c508b2e0c26d58ea3947081dddc6d 100644 --- a/src/util/util_num.hpp +++ b/src/util/util_num.hpp @@ -91,7 +91,7 @@ template<typename T, unsigned int dims, typename stype, typename decomposition> struct stub_or_real<T,dims,stype,decomposition,false> { //! switch type if we are on testing or not - typedef grid_dist_id<dims,stype,scalar<size_t>,decomposition> type; + typedef grid_dist_id<dims,stype,aggregate<size_t>,decomposition> type; }; #endif /* OPENFPM_NUMERICS_SRC_UTIL_UTIL_NUM_HPP_ */ diff --git a/src/util/util_num_unit_tests.hpp b/src/util/util_num_unit_tests.hpp index 27a305a69671d161c08a36559e6ad3a8add6d9a8..986cc5e2b6d80f1ea7c712a0321fd0038b05db84 100644 --- a/src/util/util_num_unit_tests.hpp +++ b/src/util/util_num_unit_tests.hpp @@ -97,7 +97,7 @@ BOOST_AUTO_TEST_CASE( util_num ) ret = std::is_same<stub_or_real<on_test,2,float,CartDecomposition<2,float>>::type, grid_dist_testing<2>>::value ; BOOST_REQUIRE_EQUAL(ret,true); - ret = std::is_same<stub_or_real<not_on_test,2,float,CartDecomposition<2,float>>::type, grid_dist_id<2,float,scalar<size_t>,CartDecomposition<2,float>> >::value; + ret = std::is_same<stub_or_real<not_on_test,2,float,CartDecomposition<2,float>>::type, grid_dist_id<2,float,aggregate<size_t>,CartDecomposition<2,float>> >::value; BOOST_REQUIRE_EQUAL(ret,true); //! [Usage of stub_or_real]