manual.md

@@ -34,27 +34,39 @@ You can select some of the scans to be omitted from the process, by retention ti
 
 For retention time, If you leave the start or end field empty it is considered the start or end of the scans respectively.
 
-For Filterline text keep in mind that this includes empty spaces, so for example if I select the text '''ms''' the results may contain '''ms''' or '''ms2''', but if I select '''ms '''
+For Filterline text keep in mind that this includes empty spaces, so for example if I select the text ''ms'' the results may contain ''ms'' or ''ms2'', but if I select ''ms '' (notice the space at the end) then only ''ms'' will appear.
 
 ![Capture4](/uploads/1a1ad9909501045b30e45a37d65a1c74/Capture4.PNG)
 
-3Startup Screen for [Reorder Scans](Reorder-Scans)
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+
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+Prefilter Peaks
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+I the prefilter process we remove many signals that are not repeated at all,
+this steps helps process the information much faster. 
 
 ![Capture5](/uploads/373a786032413fe03d4496e2f7f44657/Capture5.PNG)
 
-4Startup Screen for [Reorder Scans](Reorder-Scans)
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+
+Bin Type
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 ![Capture6](/uploads/a34aab2992b3c68bd4770e92f5906e0c/Capture6.PNG)
 
-5Startup Screen for [Reorder Scans](Reorder-Scans)
+Repetition Rate
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 ![Capture7](/uploads/83cececcd09aaafc540fa350b0334896/Capture7.PNG)
 
-6Startup Screen for [Reorder Scans](Reorder-Scans)
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+
+Status Page
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+When the finish button is pressed you will go to the status page, here some text information is presented to show how the progress of the process.
+
+If there are problems  they will be reported here
 
 ![Capture8](/uploads/6f418e6e06f18a7091cc70800f65f99a/Capture8.PNG)