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# Reorder Scans
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# Reorder Scans
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Is a simple tool to reorder the scans found in *.mzXML in a given folder.
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A simple tool to reorder the scans found in *.mzXML file in a given folder.
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it is used to make *.mzXML more compatible to [LipixXplorer](https://wiki.mpi-cbg.de/lipidx/Main_Page)
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It is used to make *.mzXML more compatible with [LipixXplorer](https://wiki.mpi-cbg.de/lipidx/Main_Page).
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Startup Screen for [Reorder Scans](Reorder-Scans)
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Startup Screen for [Reorder Scans](Reorder-Scans)
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... | @@ -11,20 +11,20 @@ You can start **reorder scans** by starting PeakStrainer and clicking the *reord |
... | @@ -11,20 +11,20 @@ You can start **reorder scans** by starting PeakStrainer and clicking the *reord |
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# How to use it
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# How to use it
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Select a folder, where *.mzXML files are found.
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Select a folder, where *.mzXML files are found.
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All the files in this folder will be processed in the same way.
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All the files in this folder will be processed in the same way.
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Reorder scans uses the first mzXML file it finds to get the available scan types,
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presented in the left pane.
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To order the scans, select a scan type from the left pane,
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Reorder scans uses the first mzXML file to get the available scan types,
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by double clicking or pressing the *add *button.
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these scan types are presented in the left pane.
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The right pane contains the ordered list of scan types.
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The scan type is added to the ordered scans, on the right pane.
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To add a scan type to the ordered list, select a scan type from the left pane
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a new mzXML file will be created with the scans in the order given in ordered scans pane.
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and double click or pressing the *add *button.
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In case a mistake was made, you can remove the last scan type from the ordered scans pane by clicking the *remove *button.
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Please note that scan types can be repeated in the ordered list.
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Note that scans types can be repeated in the ordered scans.
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To remove the last scan type from the ordered list click the *remove* button
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To create the ordered mzXML files click *finish* and a new folder called `ordered` will be created with the files.
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To finish the process click finish and *.mzXML files are created with the order given in the ordered list.
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The new files are created in a folder called `ordered` in the same directory as the original files.
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To close the application, click on the close button in the upper right corner of the application.
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To close the application, click on the close button in the upper right corner of the application.
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