Skip to content
Snippets Groups Projects

Compare revisions

Changes are shown as if the source revision was being merged into the target revision. Learn more about comparing revisions.

Source

Select target project
No results found

Target

Select target project
  • mosaic/software/parallel-computing/openfpm/openfpm_io
  • argupta/openfpm_io
2 results
Show changes
Commits on Source (10)
Hide whitespace changes
Inline Side-by-side
Showing
with 3 additions and 2021 deletions
.gitignore
View file @ 26f879bd
......@@ -38,21 +38,11 @@ Thumbs.db
###### Other
AUTHORS
COPYING
ChangeLog
INSTALL
NEWS
README
Makefile
Makefile.in
config.status
configure
numerics
**/.deps
**/src/config
aclocal.m4
**/autom4te.cache
src/io
csv_out.csv
test_graph.graphml
......
CMakeLists.txt
View file @ 26f879bd
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
project(openfpm_pdata LANGUAGES C CXX)
if (POLICY CMP0074)
cmake_policy(SET CMP0074 OLD)
endif ()
list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/cmake_modules/)
if (POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
set(BOOST_INCLUDE ${Boost_INCLUDE_DIR} CACHE PATH "Include directory for BOOST")
set(HDF5_ROOT CACHE PATH "HDF5 root path")
set(SE_CLASS1 CACHE BOOL "Activate compilation with SE_CLASS1")
set(SE_CLASS3 CACHE BOOL "Activate compilation with SE_CLASS3")
set(ENV{HDF5_ROOT} ${HDF5_ROOT})
set(OPENFPM_PDATA_DIR CACHE PATH "OpenFPM_pdata dirs")
set(PETSC_ROOT CACHE PATH "If compiling with linear algebra indicate the PETSC root directory")
set(ENV{PETSC_DIR} ${PETSC_ROOT})
set(HIP_ENABLE CACHE BOOL "Enable HIP compiler")
set(AMD_ARCH_COMPILE "gfx900" CACHE STRING "AMD gpu architecture used to compile kernels")
add_subdirectory (../openfpm_vcluster openfpm_vcluster)
if (CUDA_ON_BACKEND STREQUAL "CUDA")
enable_language(CUDA)
endif()
set (CMAKE_CXX_STANDARD 14)
set (CMAKE_CUDA_STANDARD 14)
if(NOT TINYOBJLOADER_FOUND)
set(TINYOBJLOADER_ROOT CACHE PATH "TinyObjLoader library path")
endif()
set(ENV{PATH} "$ENV{PATH}:${HDF5_ROOT}/bin")
set(HDF5_PREFER_PARALLEL TRUE)
set (ENV{BOOST_ROOT} ${BOOST_ROOT})
set (Boost_NO_BOOST_CMAKE OFF)
find_package(Boost 1.72.0 REQUIRED COMPONENTS unit_test_framework iostreams program_options system filesystem
OPTIONAL_COMPONENTS fiber context)
find_package(MPI REQUIRED)
find_package(HDF5 REQUIRED)
find_package(TinyObjLoader)
find_package(PETSc)
if (NOT CUDA_ON_BACKEND STREQUAL "HIP")
find_package(OpenMP)
endif()
if (CUDA_ON_BACKEND STREQUAL "HIP" AND NOT HIP_FOUND)
find_package(HIP)
endif()
if(HIP_FOUND)
set(DEFINE_HIP_GPU "#define HIP_GPU")
set(DEFINE_CUDIFY_USE_HIP "#define CUDIFY_USE_HIP")
endif()
if(HIP_FOUND)
set(DEFINE_CUDA_GPU "#define CUDA_GPU")
endif()
if(CUDA_FOUND)
set(OPENFPM_INIT_FILE "initialize/initialize_wrapper_cuda.cu")
else()
set(OPENFPM_INIT_FILE "initialize/initialize_wrapper_cuda.cpp")
endif()
###### CONFIG.h FILE ######
if(SE_CLASS1)
set(DEFINE_SE_CLASS1 "#define SE_CLASS1")
endif()
if(SE_CLASS3)
set(DEFINE_SE_CLASS3 "#define SE_CLASS3")
endif()
if(CUDA_FOUND)
set(DEFINE_CUDA_GPU "#define CUDA_GPU")
endif()
if(MPI_FOUND)
set(DEFINE_HAVE_MPI "#define HAVE_MPI")
else()
message( FATAL_ERROR "MPI is required in order to install OpenFPM" )
endif()
if(PETSC_FOUND)
set(DEFINE_HAVE_PETSC "#define HAVE_PETSC")
endif()
project(openfpm_io LANGUAGES C CXX)
if(HDF5_FOUND)
if (HDF5_IS_PARALLEL)
......@@ -106,31 +15,13 @@ if(TINYOBJLOADER_FOUND)
set(DEFINE_HAVE_TINYOBJLOADER "#define HAVE_TINYOBJLOADER 1")
endif()
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/config/config_cmake.h.in ${CMAKE_CURRENT_SOURCE_DIR}/src/config/config.h)
include_directories(SYSTEM ${MPI_INCLUDE_PATH})
add_subdirectory (src)
get_directory_property(hasParent PARENT_DIRECTORY)
if(hasParent)
set(DEFINE_HAVE_BOOST ${DEFINE_HAVE_BOOST} PARENT_SCOPE)
set(DEFINE_HAVE_BOOST_IOSTREAMS ${DEFINE_HAVE_BOOST_IOSTREAMS} PARENT_SCOPE)
set(DEFINE_HAVE_BOOST_PROGRAM_OPTIONS ${DEFINE_HAVE_BOOST_PROGRAM_OPTIONS} PARENT_SCOPE)
set(DEFINE_HAVE_BOOST_UNIT_TEST_FRAMEWORK ${DEFINE_HAVE_BOOST_UNIT_TEST_FRAMEWORK} PARENT_SCOPE)
set(DEFINE_HAVE_BOOST_CONTEXT ${DEFINE_HAVE_BOOST_CONTEXT} PARENT_SCOPE)
set(DEFINE_HAVE_BOOST_FIBER ${DEFINE_HAVE_BOOST_FIBER} PARENT_SCOPE)
set(DEFINE_HAVE_OPENMP ${DEFINE_HAVE_OPENMP} PARENT_SCOPE)
set(DEFINE_HAVE_ALPAKA ${DEFINE_HAVE_ALPAKA} PARENT_SCOPE)
set(DEFINE_CUDA_GPU ${DEFINE_CUDA_GPU} PARENT_SCOPE)
set(DEFINE_CUDIFY_BACKEND ${DEFINE_CUDIFY_BACKEND} PARENT_SCOPE)
set(OPTIONAL_BOOST_LIBS ${OPTIONAL_BOOST_LIBS} PARENT_SCOPE)
set(WARNING_SUPPRESSION_AND_OPTION_NVCC ${WARNING_SUPPRESSION_AND_OPTION_NVCC} PARENT_SCOPE)
set(WARNING_SUPPRESSION_AND_OPTION_NVCC_TEXT ${WARNING_SUPPRESSION_AND_OPTION_NVCC_TEXT} PARENT_SCOPE)
set(CUDA_FOUND ${CUDA_FOUND} PARENT_SCOPE)
set(CUDA_VERSION_MAJOR ${CUDA_VERSION_MAJOR} PARENT_SCOPE)
set(CUDA_VERSION_MINOR ${CUDA_VERSION_MINOR} PARENT_SCOPE)
set(CUDA_VERSION_PATCH ${CUDA_VERSION_PATCH} PARENT_SCOPE)
set(DEFINE_HAVE_TINYOBJLOADER ${DEFINE_HAVE_TINYOBJLOADER} CACHE INTERNAL "")
set(DEFINE_HAVE_HDF5 ${DEFINE_HAVE_HDF5} CACHE INTERNAL "")
endif()
Jenkinsfile deleted 100644 → 0
View file @ a2cb5096
#!groovy
parallel (
"nyu" : {node ('nyu')
{
deleteDir()
int ntry = 5
while (ntry != 0)
{
try {
checkout scm
ntry = 0
}
catch (IOException e)
{
ntry--
sleep(50)
}
}
stage ('build_nyu')
{
sh "./build.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
}
stage ('run_nyu')
{
sh "cd openfpm_io && ./run.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
sh "cd openfpm_io && ./success.sh 2 nyu openfpm_io"
}
}
},
"sb15" : {node ('sbalzarini-mac-15')
{
deleteDir()
env.PATH = "/usr/local/bin:${env.PATH}"
int ntry = 5
while (ntry != 0)
{
try {
checkout scm
ntry = 0
}
catch (IOException e)
{
ntry--
sleep(50)
}
}
stage ('build_sb15')
{
sh "echo $PATH && ./build.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
}
stage ('run_sb15')
{
sh "cd openfpm_io && ./run.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
sh "cd openfpm_io && ./success.sh 2 sbalzarini-mac-15 openfpm_io"
}
}
},
"gin" : {node ('gin')
{
deleteDir()
int ntry = 5
while (ntry != 0)
{
try {
checkout scm
ntry = 0
}
catch (IOException e)
{
ntry--
sleep(50)
}
}
stage ('build_gin')
{
sh "echo $PATH && ./build.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
}
stage ('run_gin')
{
sh "cd openfpm_io && ./run.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
sh "cd openfpm_io && ./success.sh 2 gin openfpm_io"
}
}
}
)
Jenkinsfile_mpi deleted 100644 → 0
View file @ a2cb5096
#!groovy
parallel (
"cifarm-ubuntu-node" : {node ('cifarm-ubuntu-node')
{
deleteDir()
int ntry = 5
while (ntry != 0)
{
try {
checkout scm
ntry = 0
}
catch (IOException e)
{
ntry--
sleep(50)
}
}
stage ('build ubuntu')
{
sh "./build.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
}
stage ('run ubuntu')
{
sh "cd openfpm_io && ./run.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
sh "cd openfpm_io && ./success.sh 2 ubuntu openfpm_io"
}
}
},
"cifarm-mac-node" : {node ('cifarm-mac-node')
{
deleteDir()
env.PATH = "/usr/local/bin:${env.PATH}"
int ntry = 5
while (ntry != 0)
{
try {
checkout scm
ntry = 0
}
catch (IOException e)
{
ntry--
sleep(50)
}
}
stage ('build mac')
{
sh "echo $PATH && ./build.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
}
stage ('run mac')
{
sh "cd openfpm_io && ./run.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
sh "cd openfpm_io && ./success.sh 2 mac openfpm_io"
}
}
},
"cifarm-centos-node" : {node ('cifarm-centos-node')
{
deleteDir()
int ntry = 5
while (ntry != 0)
{
try {
checkout scm
ntry = 0
}
catch (IOException e)
{
ntry--
sleep(50)
}
}
stage ('build_gin')
{
sh "echo $PATH && ./build.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
}
stage ('run_gin')
{
sh "cd openfpm_io && ./run.sh $WORKSPACE $NODE_NAME $BRANCH_NAME"
sh "cd openfpm_io && ./success.sh 2 centos openfpm_io"
}
}
}
)
autogen.sh deleted 100755 → 0
View file @ a2cb5096
#!/bin/sh
# a u t o g e n . s h
#
#
# Nothing to do we converted autotools to cmake but because many installation and build scripts call
build.sh deleted 100755 → 0
View file @ a2cb5096
#! /bin/bash
workspace=$1
hostname=$(hostname)
branch=$3
echo "Directory: $workspace"
echo "Machine: $hostname"
echo "Branch name: $branch"
echo "Branch: $3"
# Make a directory in /tmp/openfpm_data
mkdir /tmp/openfpm_io
mv * .[^.]* /tmp/openfpm_io
mv /tmp/openfpm_io openfpm_io
git clone git@git.mpi-cbg.de:openfpm/openfpm_devices.git openfpm_devices
cd openfpm_devices
git checkout develop
cd ..
git clone git@git.mpi-cbg.de:openfpm/openfpm_data.git openfpm_data
cd openfpm_data
git checkout develop
cd ..
git clone git@git.mpi-cbg.de:openfpm/openfpm_pdata.git openfpm_pdata
cd openfpm_pdata
git checkout develop
cd ..
git clone git@git.mpi-cbg.de:openfpm/openfpm_vcluster.git openfpm_vcluster
cd openfpm_vcluster
git checkout develop
cd ..
cd "$1/openfpm_io"
#rm -rf $HOME/openfpm_dependencies/openfpm_io/$branch/MPI
#rm -rf $HOME/openfpm_dependencies/openfpm_io/$branch/HDF5
#rm -rf $HOME/openfpm_dependencies/openfpm_io/$branch/BOOST
if [ x"$hostname" == x"cifarm-centos-node.mpi-cbg.de" ]; then
source /opt/rh/devtoolset-7/enable
./install_MPI.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
export PATH="$HOME/openfpm_dependencies/openfpm_io/$branch/MPI/bin/:$PATH"
./install_BOOST.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_HDF5.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_LIBHILBERT.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_VCDEVEL.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4 gcc g++
fi
if [ x"$hostname" == x"cifarm-ubuntu-node" ]; then
./install_MPI.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
export PATH="/opt/bin:$HOME/openfpm_dependencies/openfpm_io/$branch/MPI/bin/:$PATH"
./install_BOOST.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_HDF5.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_LIBHILBERT.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_VCDEVEL.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4 gcc g++
fi
if [ x"$hostname" == x"cifarm-mac-node.mpi-cbg.de" ]; then
export PATH="/usr/local/bin:$PATH"
./install_MPI.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
export PATH="$HOME/openfpm_dependencies/openfpm_io/$branch/MPI/bin/:$PATH"
./install_BOOST.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_HDF5.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_LIBHILBERT.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4
./install_VCDEVEL.sh $HOME/openfpm_dependencies/openfpm_io/$branch/ 4 gcc g++
fi
# Go in the right branch
echo "Compiling on $2"
sh ./autogen.sh
if [ x"$hostname" == x"cifarm-mac-node.mpi-cbg.de" ]; then
sh ./configure CXX=mpic++ --with-vcdevel=$HOME/openfpm_dependencies/openfpm_io/$branch/VCDEVEL --with-libhilbert=$HOME/openfpm_dependencies/openfpm_io/$branch/LIBHILBERT --with-hdf5=$HOME/openfpm_dependencies/openfpm_io/$branch/HDF5 --with-boost=$HOME/openfpm_dependencies/openfpm_io/$branch/BOOST --with-pdata=../../openfpm_pdata/ --enable-cuda-on-cpu
else
sh ./configure CXX=mpic++ --with-vcdevel=$HOME/openfpm_dependencies/openfpm_io/$branch/VCDEVEL --with-libhilbert=$HOME/openfpm_dependencies/openfpm_io/$branch/LIBHILBERT --with-hdf5=$HOME/openfpm_dependencies/openfpm_io/$branch/HDF5 --with-boost=$HOME/openfpm_dependencies/openfpm_io/$branch/BOOST --with-pdata=../../openfpm_pdata/ --with-cuda-on-backend=OpenMP
fi
make VERBOSE=1 -j 4
build_io.sh deleted 100755 → 0
View file @ a2cb5096
#! /bin/bash
source $HOME/.bashrc
echo "$PATH"
# Make a directory in /tmp/openfpm_data
mkdir /tmp/openfpm_io
mv * .[^.]* /tmp/openfpm_io
mv /tmp/openfpm_io openfpm_io
mkdir openfpm_io/src/config
git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_devices.git openfpm_devices
git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_data.git openfpm_data
git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_pdata.git openfpm_pdata
git clone git@ppmcore.mpi-cbg.de:incardon/openfpm_vcluster.git openfpm_vcluster
cd "$1/openfpm_io"
echo "Compiling on $2"
sh ./autogen.sh
if [ "$2" == "master" ]
then
sh ./configure CXX=mpic++ --with-hdf5=$HOME/HDF5/bin/h5pcc --disable-gpu
elif [ "$2" == "gin" ]
then
module load gcc/4.8.2
module load boost/1.54.0
sh ./configure CXX=mpic++ --with-boost=/sw/apps/boost/1.54.0/ --with-hdf5=$HOME/HDF5/bin/h5pcc
else
sh ./configure CXX=mpic++ --with-hdf5=$HOME/HDF5/bin/h5pcc
fi
make
./src/io
if [ $? -ne 0 ]; then
curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\" , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_io test \" }] }" https://hooks.slack.com/services/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
exit 1 ;
fi
curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\" , \"attachments\":[{ \"title\":\"Info:\", \"color\": \"#00FF00\", \"text\":\"$2 completed succeffuly the openfpm_io test \" }] }" https://hooks.slack.com/services/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
cmake_modules/CorrectWindowsPaths.cmake deleted 100644 → 0
View file @ a2cb5096
# CorrectWindowsPaths - this module defines one macro
#
# CONVERT_CYGWIN_PATH( PATH )
# This uses the command cygpath (provided by cygwin) to convert
# unix-style paths into paths useable by cmake on windows
macro (CONVERT_CYGWIN_PATH _path)
if (WIN32)
EXECUTE_PROCESS(COMMAND cygpath.exe -m ${${_path}}
OUTPUT_VARIABLE ${_path})
string (STRIP ${${_path}} ${_path})
endif (WIN32)
endmacro (CONVERT_CYGWIN_PATH)
cmake_modules/FindPETSc.cmake deleted 100644 → 0
View file @ a2cb5096
# - Try to find PETSc
# Once done this will define
#
# PETSC_FOUND - system has PETSc
# PETSC_INCLUDES - the PETSc include directories
# PETSC_LIBRARIES - Link these to use PETSc
# PETSC_COMPILER - Compiler used by PETSc, helpful to find a compatible MPI
# PETSC_DEFINITIONS - Compiler switches for using PETSc
# PETSC_MPIEXEC - Executable for running MPI programs
# PETSC_VERSION - Version string (MAJOR.MINOR.SUBMINOR)
#
# Usage:
# find_package(PETSc COMPONENTS CXX) - required if build --with-clanguage=C++ --with-c-support=0
# find_package(PETSc COMPONENTS C) - standard behavior of checking build using a C compiler
# find_package(PETSc) - same as above
#
# Setting these changes the behavior of the search
# PETSC_DIR - directory in which PETSc resides
# PETSC_ARCH - build architecture
#
# Redistribution and use is allowed according to the terms of the BSD license.
# For details see the accompanying COPYING-CMAKE-SCRIPTS file.
#
cmake_policy(VERSION 3.3)
set(PETSC_VALID_COMPONENTS
C
CXX)
if(NOT PETSc_FIND_COMPONENTS)
get_property (_enabled_langs GLOBAL PROPERTY ENABLED_LANGUAGES)
if ("C" IN_LIST _enabled_langs)
set(PETSC_LANGUAGE_BINDINGS "C")
else ()
set(PETSC_LANGUAGE_BINDINGS "CXX")
endif ()
else()
# Right now, this is designed for compatability with the --with-clanguage option, so
# only allow one item in the components list.
list(LENGTH ${PETSc_FIND_COMPONENTS} components_length)
if(${components_length} GREATER 1)
message(FATAL_ERROR "Only one component for PETSc is allowed to be specified")
endif()
# This is a stub for allowing multiple components should that time ever come. Perhaps
# to also test Fortran bindings?
foreach(component ${PETSc_FIND_COMPONENTS})
list(FIND PETSC_VALID_COMPONENTS ${component} component_location)
if(${component_location} EQUAL -1)
message(FATAL_ERROR "\"${component}\" is not a valid PETSc component.")
else()
list(APPEND PETSC_LANGUAGE_BINDINGS ${component})
endif()
endforeach()
endif()
function (petsc_get_version)
if (EXISTS "${PETSC_DIR}/include/petscversion.h")
file (STRINGS "${PETSC_DIR}/include/petscversion.h" vstrings REGEX "#define PETSC_VERSION_(RELEASE|MAJOR|MINOR|SUBMINOR|PATCH) ")
foreach (line ${vstrings})
string (REGEX REPLACE " +" ";" fields ${line}) # break line into three fields (the first is always "#define")
list (GET fields 1 var)
list (GET fields 2 val)
set (${var} ${val} PARENT_SCOPE)
set (${var} ${val}) # Also in local scope so we have access below
endforeach ()
if (PETSC_VERSION_RELEASE)
if ($(PETSC_VERSION_PATCH) GREATER 0)
set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}p${PETSC_VERSION_PATCH}" CACHE INTERNAL "PETSc version")
else ()
set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" CACHE INTERNAL "PETSc version")
endif ()
else ()
# make dev version compare higher than any patch level of a released version
set (PETSC_VERSION "${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}.99" CACHE INTERNAL "PETSc version")
endif ()
else ()
message (SEND_ERROR "PETSC_DIR can not be used, ${PETSC_DIR}/include/petscversion.h does not exist")
endif ()
endfunction ()
# Debian uses versioned paths e.g /usr/lib/petscdir/3.5/
file (GLOB DEB_PATHS "/usr/lib/petscdir/*")
find_path (PETSC_DIR include/petsc.h
HINTS ENV PETSC_DIR
PATHS
/usr/lib/petsc
# Debian paths
${DEB_PATHS}
# Arch Linux path
/opt/petsc/linux-c-opt
# MacPorts path
/opt/local/lib/petsc
$ENV{HOME}/petsc
DOC "PETSc Directory")
find_program (MAKE_EXECUTABLE NAMES make gmake)
if (PETSC_DIR AND NOT PETSC_ARCH)
set (_petsc_arches
$ENV{PETSC_ARCH} # If set, use environment variable first
linux-gnu-c-debug linux-gnu-c-opt # Debian defaults
x86_64-unknown-linux-gnu i386-unknown-linux-gnu)
set (petscconf "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
foreach (arch ${_petsc_arches})
if (NOT PETSC_ARCH)
find_path (petscconf petscconf.h
HINTS ${PETSC_DIR}
PATH_SUFFIXES ${arch}/include bmake/${arch}
NO_DEFAULT_PATH)
if (petscconf)
set (PETSC_ARCH "${arch}" CACHE STRING "PETSc build architecture")
endif (petscconf)
endif (NOT PETSC_ARCH)
endforeach (arch)
set (petscconf "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
endif (PETSC_DIR AND NOT PETSC_ARCH)
set (petsc_slaves LIBRARIES_SYS LIBRARIES_VEC LIBRARIES_MAT LIBRARIES_DM LIBRARIES_KSP LIBRARIES_SNES LIBRARIES_TS
INCLUDE_DIR INCLUDE_CONF)
include (FindPackageMultipass)
find_package_multipass (PETSc petsc_config_current
STATES DIR ARCH
DEPENDENTS INCLUDES LIBRARIES COMPILER MPIEXEC ${petsc_slaves})
# Determine whether the PETSc layout is old-style (through 2.3.3) or
# new-style (>= 3.0.0)
if (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscvariables") # > 3.5
set (petsc_conf_rules "${PETSC_DIR}/lib/petsc/conf/rules")
set (petsc_conf_variables "${PETSC_DIR}/lib/petsc/conf/variables")
elseif (EXISTS "${PETSC_DIR}/${PETSC_ARCH}/include/petscconf.h") # > 2.3.3
set (petsc_conf_rules "${PETSC_DIR}/conf/rules")
set (petsc_conf_variables "${PETSC_DIR}/conf/variables")
elseif (EXISTS "${PETSC_DIR}/bmake/${PETSC_ARCH}/petscconf.h") # <= 2.3.3
set (petsc_conf_rules "${PETSC_DIR}/bmake/common/rules")
set (petsc_conf_variables "${PETSC_DIR}/bmake/common/variables")
elseif (PETSC_DIR)
message (SEND_ERROR "The pair PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} do not specify a valid PETSc installation")
endif ()
if (petsc_conf_rules AND petsc_conf_variables AND NOT petsc_config_current)
petsc_get_version()
# Put variables into environment since they are needed to get
# configuration (petscvariables) in the PETSc makefile
set (ENV{PETSC_DIR} "${PETSC_DIR}")
set (ENV{PETSC_ARCH} "${PETSC_ARCH}")
# A temporary makefile to probe the PETSc configuration
set (petsc_config_makefile "${PROJECT_BINARY_DIR}/Makefile.petsc")
file (WRITE "${petsc_config_makefile}"
"## This file was autogenerated by FindPETSc.cmake
# PETSC_DIR = ${PETSC_DIR}
# PETSC_ARCH = ${PETSC_ARCH}
include ${petsc_conf_rules}
include ${petsc_conf_variables}
show :
\t-@echo -n \${\${VARIABLE}}
")
macro (PETSC_GET_VARIABLE name var)
set (${var} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
execute_process (COMMAND ${MAKE_EXECUTABLE} --no-print-directory -f ${petsc_config_makefile} show VARIABLE=${name}
OUTPUT_VARIABLE ${var}
RESULT_VARIABLE petsc_return)
endmacro (PETSC_GET_VARIABLE)
petsc_get_variable (PETSC_LIB_DIR petsc_lib_dir)
petsc_get_variable (PETSC_EXTERNAL_LIB_BASIC petsc_libs_external)
petsc_get_variable (PETSC_CCPPFLAGS petsc_cpp_line)
petsc_get_variable (PETSC_INCLUDE petsc_include)
petsc_get_variable (PCC petsc_cc)
petsc_get_variable (PCC_FLAGS petsc_cc_flags)
petsc_get_variable (MPIEXEC petsc_mpiexec)
# We are done with the temporary Makefile, calling PETSC_GET_VARIABLE after this point is invalid!
file (REMOVE ${petsc_config_makefile})
execute_process(COMMAND ${MPI_C_COMPILER} --showme:compile OUTPUT_VARIABLE mpi_compile_options ERROR_VARIABLE mpi_compile_error)
set(petsc_cpp_line ${petsc_cpp_line} ${mpi_compile_options})
include (ResolveCompilerPaths)
# Extract include paths and libraries from compile command line
resolve_includes (petsc_includes_all "${petsc_cpp_line}")
#on windows we need to make sure we're linking against the right
#runtime library
if (WIN32)
if (petsc_cc_flags MATCHES "-MT")
set(using_md False)
foreach(flag_var
CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE
CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_RELWITHDEBINFO
CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO)
if(${flag_var} MATCHES "/MD")
set(using_md True)
endif(${flag_var} MATCHES "/MD")
endforeach(flag_var)
if(${using_md} MATCHES "True")
message(WARNING "PETSc was built with /MT, but /MD is currently set.
See http://www.cmake.org/Wiki/CMake_FAQ#How_can_I_build_my_MSVC_application_with_a_static_runtime.3F")
endif(${using_md} MATCHES "True")
endif (petsc_cc_flags MATCHES "-MT")
endif (WIN32)
include (CorrectWindowsPaths)
convert_cygwin_path(petsc_lib_dir)
message (STATUS "petsc_lib_dir ${petsc_lib_dir}")
macro (PETSC_FIND_LIBRARY suffix name)
set (PETSC_LIBRARY_${suffix} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # Clear any stale value, if we got here, we need to find it again
if (WIN32)
set (libname lib${name}) #windows expects "libfoo", linux expects "foo"
else (WIN32)
set (libname ${name})
endif (WIN32)
find_library (PETSC_LIBRARY_${suffix} NAMES ${libname} HINTS ${petsc_lib_dir} NO_DEFAULT_PATH)
set (PETSC_LIBRARIES_${suffix} "${PETSC_LIBRARY_${suffix}}")
mark_as_advanced (PETSC_LIBRARY_${suffix})
endmacro (PETSC_FIND_LIBRARY suffix name)
# Look for petscvec first, if it doesn't exist, we must be using single-library
petsc_find_library (VEC petscvec)
if (PETSC_LIBRARY_VEC)
petsc_find_library (SYS "petscsys;petsc") # libpetscsys is called libpetsc prior to 3.1 (when single-library was introduced)
petsc_find_library (MAT petscmat)
petsc_find_library (DM petscdm)
petsc_find_library (KSP petscksp)
petsc_find_library (SNES petscsnes)
petsc_find_library (TS petscts)
macro (PETSC_JOIN libs deps)
list (APPEND PETSC_LIBRARIES_${libs} ${PETSC_LIBRARIES_${deps}})
endmacro (PETSC_JOIN libs deps)
petsc_join (VEC SYS)
petsc_join (MAT VEC)
petsc_join (DM MAT)
petsc_join (KSP DM)
petsc_join (SNES KSP)
petsc_join (TS SNES)
petsc_join (ALL TS)
else ()
set (PETSC_LIBRARY_VEC "NOTFOUND" CACHE INTERNAL "Cleared" FORCE) # There is no libpetscvec
petsc_find_library (SINGLE petsc)
# Debian 9/Ubuntu 16.04 uses _real and _complex extensions when using libraries in /usr/lib/petsc.
if (NOT PETSC_LIBRARY_SINGLE)
petsc_find_library (SINGLE petsc_real)
endif()
if (NOT PETSC_LIBRARY_SINGLE)
petsc_find_library (SINGLE petsc_complex)
endif()
foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
set (PETSC_LIBRARIES_${pkg} "${PETSC_LIBRARY_SINGLE}")
endforeach ()
endif ()
if (PETSC_LIBRARY_TS)
message (STATUS "Recognized PETSc install with separate libraries for each package")
else ()
message (STATUS "Recognized PETSc install with single library for all packages")
endif ()
include(Check${PETSC_LANGUAGE_BINDINGS}SourceRuns)
macro (PETSC_TEST_RUNS includes libraries runs)
if (PETSC_VERSION VERSION_GREATER 3.1)
set (_PETSC_TSDestroy "TSDestroy(&ts)")
else ()
set (_PETSC_TSDestroy "TSDestroy(ts)")
endif ()
set(_PETSC_TEST_SOURCE "
static const char help[] = \"PETSc test program.\";
#include <petscts.h>
int main(int argc,char *argv[]) {
PetscErrorCode ierr;
TS ts;
ierr = PetscInitialize(&argc,&argv,0,help);CHKERRQ(ierr);
ierr = TSCreate(PETSC_COMM_WORLD,&ts);CHKERRQ(ierr);
ierr = TSSetFromOptions(ts);CHKERRQ(ierr);
ierr = ${_PETSC_TSDestroy};CHKERRQ(ierr);
ierr = PetscFinalize();CHKERRQ(ierr);
return 0;
}
")
multipass_source_runs ("${includes}" "${libraries}" "${_PETSC_TEST_SOURCE}" ${runs} "${PETSC_LANGUAGE_BINDINGS}")
if (${${runs}})
set (PETSC_EXECUTABLE_RUNS "YES" CACHE BOOL
"Can the system successfully run a PETSc executable? This variable can be manually set to \"YES\" to force CMake to accept a given PETSc configuration, but this will almost always result in a broken build. If you change PETSC_DIR, PETSC_ARCH, or PETSC_CURRENT you would have to reset this variable." FORCE)
endif (${${runs}})
endmacro (PETSC_TEST_RUNS)
find_path (PETSC_INCLUDE_DIR petscts.h HINTS "${PETSC_DIR}" PATH_SUFFIXES include NO_DEFAULT_PATH)
find_path (PETSC_INCLUDE_CONF petscconf.h HINTS "${PETSC_DIR}" PATH_SUFFIXES "${PETSC_ARCH}/include" "bmake/${PETSC_ARCH}" NO_DEFAULT_PATH)
mark_as_advanced (PETSC_INCLUDE_DIR PETSC_INCLUDE_CONF)
set (petsc_includes_minimal ${PETSC_INCLUDE_CONF} ${PETSC_INCLUDE_DIR})
petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_minimal)
if (petsc_works_minimal)
message (STATUS "Minimal PETSc includes and libraries work. This probably means we are building with shared libs.")
set (petsc_includes_needed "${petsc_includes_minimal}")
else (petsc_works_minimal) # Minimal includes fail, see if just adding full includes fixes it
petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_allincludes)
if (petsc_works_allincludes) # It does, we just need all the includes (
message (STATUS "PETSc requires extra include paths, but links correctly with only interface libraries. This is an unexpected configuration (but it seems to work fine).")
set (petsc_includes_needed ${petsc_includes_all})
else (petsc_works_allincludes) # We are going to need to link the external libs explicitly
resolve_libraries (petsc_libraries_external "${petsc_libs_external}")
foreach (pkg SYS VEC MAT DM KSP SNES TS ALL)
list (APPEND PETSC_LIBRARIES_${pkg} ${petsc_libraries_external})
endforeach (pkg)
petsc_test_runs ("${petsc_includes_minimal}" "${PETSC_LIBRARIES_TS}" petsc_works_alllibraries)
if (petsc_works_alllibraries)
message (STATUS "PETSc only need minimal includes, but requires explicit linking to all dependencies. This is expected when PETSc is built with static libraries.")
set (petsc_includes_needed ${petsc_includes_minimal})
else (petsc_works_alllibraries)
# It looks like we really need everything, should have listened to Matt
set (petsc_includes_needed ${petsc_includes_all})
petsc_test_runs ("${petsc_includes_all}" "${PETSC_LIBRARIES_TS}" petsc_works_all)
if (petsc_works_all) # We fail anyways
message (STATUS "PETSc requires extra include paths and explicit linking to all dependencies. This probably means you have static libraries and something unexpected in PETSc headers.")
else (petsc_works_all) # We fail anyways
message (STATUS "PETSc could not be used, maybe the install is broken.")
endif (petsc_works_all)
endif (petsc_works_alllibraries)
endif (petsc_works_allincludes)
endif (petsc_works_minimal)
# We do an out-of-source build so __FILE__ will be an absolute path, hence __INSDIR__ is superfluous
if (${PETSC_VERSION} VERSION_LESS 3.1)
set (PETSC_DEFINITIONS "-D__SDIR__=\"\"" CACHE STRING "PETSc definitions" FORCE)
else ()
set (PETSC_DEFINITIONS "-D__INSDIR__=" CACHE STRING "PETSc definitions" FORCE)
endif ()
# Sometimes this can be used to assist FindMPI.cmake
set (PETSC_MPIEXEC ${petsc_mpiexec} CACHE FILEPATH "Executable for running PETSc MPI programs" FORCE)
set (PETSC_INCLUDES ${petsc_includes_needed} CACHE STRING "PETSc include path" FORCE)
set (PETSC_LIBRARIES ${PETSC_LIBRARIES_ALL} CACHE STRING "PETSc libraries" FORCE)
set (PETSC_COMPILER ${petsc_cc} CACHE FILEPATH "PETSc compiler" FORCE)
# Note that we have forced values for all these choices. If you
# change these, you are telling the system to trust you that they
# work. It is likely that you will end up with a broken build.
mark_as_advanced (PETSC_INCLUDES PETSC_LIBRARIES PETSC_COMPILER PETSC_DEFINITIONS PETSC_MPIEXEC PETSC_EXECUTABLE_RUNS)
endif ()
include (FindPackageHandleStandardArgs)
find_package_handle_standard_args (PETSc
REQUIRED_VARS PETSC_INCLUDES PETSC_LIBRARIES PETSC_EXECUTABLE_RUNS
VERSION_VAR PETSC_VERSION
FAIL_MESSAGE "PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH.")
cmake_modules/FindPackageMultipass.cmake deleted 100644 → 0
View file @ a2cb5096
# PackageMultipass - this module defines two macros
#
# FIND_PACKAGE_MULTIPASS (Name CURRENT
# STATES VAR0 VAR1 ...
# DEPENDENTS DEP0 DEP1 ...)
#
# This function creates a cache entry <UPPERCASED-Name>_CURRENT which
# the user can set to "NO" to trigger a reconfiguration of the package.
# The first time this function is called, the values of
# <UPPERCASED-Name>_VAR0, ... are saved. If <UPPERCASED-Name>_CURRENT
# is false or if any STATE has changed since the last time
# FIND_PACKAGE_MULTIPASS() was called, then CURRENT will be set to "NO",
# otherwise CURRENT will be "YES". IF not CURRENT, then
# <UPPERCASED-Name>_DEP0, ... will be FORCED to NOTFOUND.
# Example:
# find_path (FOO_DIR include/foo.h)
# FIND_PACKAGE_MULTIPASS (Foo foo_current
# STATES DIR
# DEPENDENTS INCLUDES LIBRARIES)
# if (NOT foo_current)
# # Make temporary files, run programs, etc, to determine FOO_INCLUDES and FOO_LIBRARIES
# endif (NOT foo_current)
#
# MULTIPASS_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS LANGUAGE)
# Always runs the given test, use this when you need to re-run tests
# because parent variables have made old cache entries stale. The LANGUAGE
# variable is either C or CXX indicating which compiler the test should
# use.
# MULTIPASS_C_SOURCE_RUNS (Name INCLUDES LIBRARIES SOURCE RUNS)
# DEPRECATED! This is only included for backwards compatability. Use
# the more general MULTIPASS_SOURCE_RUNS instead.
# Always runs the given test, use this when you need to re-run tests
# because parent variables have made old cache entries stale.
macro (FIND_PACKAGE_MULTIPASS _name _current)
string (TOUPPER ${_name} _NAME)
set (_args ${ARGV})
list (REMOVE_AT _args 0 1)
set (_states_current "YES")
list (GET _args 0 _cmd)
if (_cmd STREQUAL "STATES")
list (REMOVE_AT _args 0)
list (GET _args 0 _state)
while (_state AND NOT _state STREQUAL "DEPENDENTS")
# The name of the stored value for the given state
set (_stored_var PACKAGE_MULTIPASS_${_NAME}_${_state})
if (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
set (_states_current "NO")
endif (NOT "${${_stored_var}}" STREQUAL "${${_NAME}_${_state}}")
set (${_stored_var} "${${_NAME}_${_state}}" CACHE INTERNAL "Stored state for ${_name}." FORCE)
list (REMOVE_AT _args 0)
list (GET _args 0 _state)
endwhile (_state AND NOT _state STREQUAL "DEPENDENTS")
endif (_cmd STREQUAL "STATES")
set (_stored ${_NAME}_CURRENT)
if (NOT ${_stored})
set (${_stored} "YES" CACHE BOOL "Is the configuration for ${_name} current? Set to \"NO\" to reconfigure." FORCE)
set (_states_current "NO")
endif (NOT ${_stored})
set (${_current} ${_states_current})
if (NOT ${_current} AND PACKAGE_MULTIPASS_${_name}_CALLED)
message (STATUS "Clearing ${_name} dependent variables")
# Clear all the dependent variables so that the module can reset them
list (GET _args 0 _cmd)
if (_cmd STREQUAL "DEPENDENTS")
list (REMOVE_AT _args 0)
foreach (dep ${_args})
set (${_NAME}_${dep} "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
endforeach (dep)
endif (_cmd STREQUAL "DEPENDENTS")
set (${_NAME}_FOUND "NOTFOUND" CACHE INTERNAL "Cleared" FORCE)
endif ()
set (PACKAGE_MULTIPASS_${name}_CALLED YES CACHE INTERNAL "Private" FORCE)
endmacro (FIND_PACKAGE_MULTIPASS)
macro (MULTIPASS_SOURCE_RUNS includes libraries source runs language)
include (Check${language}SourceRuns)
# This is a ridiculous hack. CHECK_${language}_SOURCE_* thinks that if the
# *name* of the return variable doesn't change, then the test does
# not need to be re-run. We keep an internal count which we
# increment to guarantee that every test name is unique. If we've
# gotten here, then the configuration has changed enough that the
# test *needs* to be rerun.
if (NOT MULTIPASS_TEST_COUNT)
set (MULTIPASS_TEST_COUNT 00)
endif (NOT MULTIPASS_TEST_COUNT)
math (EXPR _tmp "${MULTIPASS_TEST_COUNT} + 1") # Why can't I add to a cache variable?
set (MULTIPASS_TEST_COUNT ${_tmp} CACHE INTERNAL "Unique test ID")
set (testname MULTIPASS_TEST_${MULTIPASS_TEST_COUNT}_${runs})
set (CMAKE_REQUIRED_INCLUDES ${includes})
set (CMAKE_REQUIRED_LIBRARIES ${libraries})
if(${language} STREQUAL "C")
check_c_source_runs ("${source}" ${testname})
elseif(${language} STREQUAL "CXX")
check_cxx_source_runs ("${source}" ${testname})
endif()
set (${runs} "${${testname}}")
endmacro (MULTIPASS_SOURCE_RUNS)
macro (MULTIPASS_C_SOURCE_RUNS includes libraries source runs)
multipass_source_runs("${includes}" "${libraries}" "${source}" ${runs} "C")
endmacro (MULTIPASS_C_SOURCE_RUNS)
cmake_modules/FindTinyObjLoader.cmake deleted 100644 → 0
View file @ a2cb5096
# - Try to find LibHilbert
# Once done this will define
#
# TINYOBJLOADER_FOUND - system has TinyObjLoader
# TINYOBJLOADER_INCLUDE_DIRS - include directories for TinyObjLoader
# TINYOBJLOADER_LIBRARY_DIRS - library directories for TinyObjLoader
# TINYOBJLOADER_LIBRARIES - libraries for TinyObjLoader
#
#=============================================================================
# Copyright (C) 2010-2016 Pietro Incardona
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# 1. Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# 2. Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in
# the documentation and/or other materials provided with the
# distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#=============================================================================
if (TINYOBJLOADER_FOUND OR TARGET tinyobjloader)
return()
endif()
add_library(tinyobjloader INTERFACE IMPORTED)
# Add libraries (static)
set(_libs "-L${TINYOBJLOADER_ROOT}/lib64 -ltinyobjloader")
set_property(TARGET tinyobjloader PROPERTY INTERFACE_LINK_LIBRARIES "${_libs}")
# Create LibHilbert test program
set(TINYOBJLOADER_TEST_LIB_CPP
"${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/tinyobjloader_test_lib.cpp")
file(WRITE ${TINYOBJLOADER_TEST_LIB_CPP} "
#define TINYOBJLOADER_IMPLEMENTATION
#include \"tiny_obj_loader.h\"
int main()
{
std::string inputfile = \"null.obj\";
tinyobj::attrib_t attrib;
std::vector<tinyobj::shape_t> shapes;
std::vector<tinyobj::material_t> materials;
std::string err;
bool ret = tinyobj::LoadObj(&attrib, &shapes, &materials, &err, inputfile.c_str());
return 0;
}
")
# Try to run test program (static linking)
try_run(
TINYOBJLOADER_TEST_LIB_EXITCODE
TINYOBJLOADER_TEST_LIB_COMPILED
${CMAKE_CURRENT_BINARY_DIR}
${TINYOBJLOADER_TEST_LIB_CPP}
CMAKE_FLAGS
"-DINCLUDE_DIRECTORIES:STRING=${TINYOBJLOADER_ROOT}/include"
"-DLINK_LIBRARIES:STRING=${TINYOBJLOADER_ROOT}/lib"
LINK_LIBRARIES tinyobjloader
COMPILE_OUTPUT_VARIABLE TINYOBJLOADER_TEST_LIB_COMPILE_OUTPUT
RUN_OUTPUT_VARIABLE TINYOBJLOADER_TEST_LIB_OUTPUT)
if (TINYOBJLOADER_TEST_LIB_COMPILED AND TINYOBJLOADER_TEST_LIB_EXITCODE EQUAL 0)
message(STATUS "Test TinyObjLoader_TEST_RUNS static linking - Success")
set(TINYOBJLOADER_TEST_RUNS TRUE)
set(TINYOBJLOADER_FOUND TRUE)
set(TINYOBJLOADER_INCLUDE_DIRS ${TINYOBJLOADER_ROOT}/include)
set(TINYOBJLOADER_LIBRARY_DIRS ${TINYOBJLOADER_ROOT}/lib64)
set(TINYOBJLOADER_LIBRARIES -ltinyobjloader)
else()
message(STATUS "Test TinyObjLoader_TEST_RUNS static linking - Failed")
set(TINYOBJLOADER_TEST_RUNS FALSE)
endif()
cmake_modules/ResolveCompilerPaths.cmake deleted 100644 → 0
View file @ a2cb5096
# ResolveCompilerPaths - this module defines two macros
#
# RESOLVE_LIBRARIES (XXX_LIBRARIES LINK_LINE)
# This macro is intended to be used by FindXXX.cmake modules.
# It parses a compiler link line and resolves all libraries
# (-lfoo) using the library path contexts (-L/path) in scope.
# The result in XXX_LIBRARIES is the list of fully resolved libs.
# Example:
#
# RESOLVE_LIBRARIES (FOO_LIBRARIES "-L/A -la -L/B -lb -lc -ld")
#
# will be resolved to
#
# FOO_LIBRARIES:STRING="/A/liba.so;/B/libb.so;/A/libc.so;/usr/lib/libd.so"
#
# if the filesystem looks like
#
# /A: liba.so libc.so
# /B: liba.so libb.so
# /usr/lib: liba.so libb.so libc.so libd.so
#
# and /usr/lib is a system directory.
#
# Note: If RESOLVE_LIBRARIES() resolves a link line differently from
# the native linker, there is a bug in this macro (please report it).
#
# RESOLVE_INCLUDES (XXX_INCLUDES INCLUDE_LINE)
# This macro is intended to be used by FindXXX.cmake modules.
# It parses a compile line and resolves all includes
# (-I/path/to/include) to a list of directories. Other flags are ignored.
# Example:
#
# RESOLVE_INCLUDES (FOO_INCLUDES "-I/A -DBAR='\"irrelevant -I/string here\"' -I/B")
#
# will be resolved to
#
# FOO_INCLUDES:STRING="/A;/B"
#
# assuming both directories exist.
# Note: as currently implemented, the -I/string will be picked up mistakenly (cry, cry)
include (CorrectWindowsPaths)
macro (RESOLVE_LIBRARIES LIBS LINK_LINE)
string (REGEX MATCHALL "((-L|-l|-Wl)([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))" _all_tokens "${LINK_LINE}")
set (_libs_found "")
set (_directory_list "")
foreach (token ${_all_tokens})
if (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
# If it's a library path, add it to the list
string (REGEX REPLACE "^-L" "" token ${token})
string (REGEX REPLACE "//" "/" token ${token})
convert_cygwin_path(token)
list (APPEND _directory_list ${token})
elseif (token MATCHES "^(-l([^\" ]+|\"[^\"]+\")|[^\" ]+\\.(a|so|dll|lib))")
# It's a library, resolve the path by looking in the list and then (by default) in system directories
if (WIN32) #windows expects "libfoo", linux expects "foo"
string (REGEX REPLACE "^-l" "lib" token ${token})
else (WIN32)
string (REGEX REPLACE "^-l" "" token ${token})
endif (WIN32)
set (_root "")
if (token MATCHES "^/") # We have an absolute path
#separate into a path and a library name:
string (REGEX MATCH "[^/]*\\.(a|so|dll|lib)$" libname ${token})
string (REGEX MATCH ".*[^${libname}$]" libpath ${token})
convert_cygwin_path(libpath)
set (_directory_list ${_directory_list} ${libpath})
set (token ${libname})
endif (token MATCHES "^/")
set (_lib "NOTFOUND" CACHE FILEPATH "Cleared" FORCE)
find_library (_lib ${token} HINTS ${_directory_list} ${_root})
if (_lib)
string (REPLACE "//" "/" _lib ${_lib})
list (APPEND _libs_found ${_lib})
else (_lib)
message (STATUS "Unable to find library ${token}")
endif (_lib)
endif (token MATCHES "-L([^\" ]+|\"[^\"]+\")")
endforeach (token)
set (_lib "NOTFOUND" CACHE INTERNAL "Scratch variable" FORCE)
# only the LAST occurence of each library is required since there should be no circular dependencies
if (_libs_found)
list (REVERSE _libs_found)
list (REMOVE_DUPLICATES _libs_found)
list (REVERSE _libs_found)
endif (_libs_found)
set (${LIBS} "${_libs_found}")
endmacro (RESOLVE_LIBRARIES)
macro (RESOLVE_INCLUDES INCS COMPILE_LINE)
string (REGEX MATCHALL "-I([^\" ]+|\"[^\"]+\")" _all_tokens "${COMPILE_LINE}")
set (_incs_found "")
foreach (token ${_all_tokens})
string (REGEX REPLACE "^-I" "" token ${token})
string (REGEX REPLACE "//" "/" token ${token})
convert_cygwin_path(token)
if (EXISTS ${token})
list (APPEND _incs_found ${token})
else (EXISTS ${token})
message (STATUS "Include directory ${token} does not exist")
endif (EXISTS ${token})
endforeach (token)
list (REMOVE_DUPLICATES _incs_found)
set (${INCS} "${_incs_found}")
endmacro (RESOLVE_INCLUDES)
configure deleted 100755 → 0
View file @ a2cb5096
#!/bin/bash
# configure script
#
#
# Because we moved to cmake this script emulate the configure script from autotools
conf_options=
ld_lib_pathopt=
# Avoid depending upon Character Ranges.
as_cr_letters='abcdefghijklmnopqrstuvwxyz'
as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
as_cr_Letters=$as_cr_letters$as_cr_LETTERS
as_cr_digits='0123456789'
as_cr_alnum=$as_cr_Letters$as_cr_digits
# as_fn_error STATUS ERROR [LINENO LOG_FD]
# ----------------------------------------
# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
# script with STATUS, using 1 if that was 0.
as_fn_error ()
{
as_status=$1; test $as_status -eq 0 && as_status=1
if test "$4"; then
as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
$as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
fi
$as_echo "$as_me: error: $2" >&2
as_fn_exit $as_status
} # as_fn_error
# as_fn_exit STATUS
# -----------------
# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
as_fn_exit ()
{
set +e
as_fn_set_status $1
exit $1
} # as_fn_exit
# as_fn_set_status STATUS
# -----------------------
# Set $? to STATUS, without forking.
as_fn_set_status ()
{
return $1
} # as_fn_set_status
# Printing a long string crashes Solaris 7 /usr/bin/printf.
as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
# Prefer a ksh shell builtin over an external printf program on Solaris,
# but without wasting forks for bash or zsh.
if test -z "$BASH_VERSION$ZSH_VERSION" \
&& (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='print -r --'
as_echo_n='print -rn --'
elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='printf %s\n'
as_echo_n='printf %s'
else
if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
as_echo_n='/usr/ucb/echo -n'
else
as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
as_echo_n_body='eval
arg=$1;
case $arg in #(
*"$as_nl"*)
expr "X$arg" : "X\\(.*\\)$as_nl";
arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
esac;
expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
'
export as_echo_n_body
as_echo_n='sh -c $as_echo_n_body as_echo'
fi
export as_echo_body
as_echo='sh -c $as_echo_body as_echo'
fi
ac_user_opts='
enable_option_checking
enable_silent_rules
enable_shared
enable_static
with_pic
enable_fast_install
with_aix_soname
enable_dependency_tracking
with_gnu_ld
with_sysroot
enable_libtool_lock
enable_debug
with_metis
with_hdf5
with_libhilbert
with_cuda_on_backend
enable_cuda_on_cpu
enable_scan_coverty
enable_test_performance
enable_test_coverage
with_parmetis
enable_se_class1
enable_se_class2
enable_se_class3
with_alpaka
with_action_on_error
with_boost
with_boost_libdir
with_boost_unit_test_framework
with_boost_program_options
with_boost_iostreams
with_blas
with_lapack
with_suitesparse
with_petsc
with_eigen
with_vcdevel
enable_gpu
enable_asan
enable_garbageinj
enable_garbageinjv
'
rm -rf build
if [ ! -d "build" ]; then
mkdir build
fi
echo "/usr/local" > install_dir
##### Go over all options
for ac_option
do
# If the previous option needs an argument, assign it.
if test -n "$ac_prev"; then
eval $ac_prev=\$ac_option
ac_prev=
continue
fi
case $ac_option in
*=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
*=) ac_optarg= ;;
*) ac_optarg=yes ;;
esac
# Accept the important Cygnus configure options, so we can diagnose typos.
case $ac_dashdash$ac_option in
--)
ac_dashdash=yes ;;
-bindir | --bindir | --bindi | --bind | --bin | --bi)
ac_prev=bindir ;;
-bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*)
bindir=$ac_optarg ;;
-build | --build | --buil | --bui | --bu)
ac_prev=build_alias ;;
-build=* | --build=* | --buil=* | --bui=* | --bu=*)
build_alias=$ac_optarg ;;
-cache-file | --cache-file | --cache-fil | --cache-fi \
| --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
ac_prev=cache_file ;;
-cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
| --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*)
cache_file=$ac_optarg ;;
--config-cache | -C)
cache_file=config.cache ;;
-datadir | --datadir | --datadi | --datad)
ac_prev=datadir ;;
-datadir=* | --datadir=* | --datadi=* | --datad=*)
datadir=$ac_optarg ;;
-datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
| --dataroo | --dataro | --datar)
ac_prev=datarootdir ;;
-datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
| --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
datarootdir=$ac_optarg ;;
-disable-* | --disable-*)
ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_useropt in
gpu)
conf_options="$conf_options -DENABLE_GPU=OFF"
;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--disable-$ac_useropt_orig"
ac_unrecognized_sep=', ';;
esac
eval enable_$ac_useropt=no ;;
-docdir | --docdir | --docdi | --doc | --do)
ac_prev=docdir ;;
-docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
docdir=$ac_optarg ;;
-dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
ac_prev=dvidir ;;
-dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
dvidir=$ac_optarg ;;
-enable-* | --enable-*)
ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_useropt in
debug)
conf_options="$conf_options -DCMAKE_BUILD_TYPE=Debug"
debug_mode=1
;;
se_class1)
conf_options="$conf_options -DSE_CLASS1=ON"
;;
se_class2)
conf_options="$conf_options -DSE_CLASS2=ON"
;;
se_class3)
conf_options="$conf_options -DSE_CLASS3=ON"
;;
test_coverage)
conf_options="$conf_options -DTEST_COVERAGE=ON"
;;
scan_coverty)
conf_options="$conf_options -DSCAN_COVERTY=ON"
;;
cuda_on_cpu)
conf_options="$conf_options -DCUDA_ON_BACKEND=SEQUENTIAL"
;;
test_performance)
conf_options="$conf_options -DTEST_PERFORMANCE=ON"
;;
gpu)
if [ x"$CXX" == x"" ]; then
conf_options="$conf_options"
else
conf_options="$conf_options -DCMAKE_CUDA_HOST_COMPILER=$(which $CXX)"
fi
if [ x"$CXXCUDA" == x"" ]; then
conf_options="$conf_options"
else
conf_options="$conf_options -DCMAKE_CUDA_COMPILER=$(which $CXXCUDA)"
fi
conf_options="$conf_options -DENABLE_GPU=ON"
;;
asan)
conf_options="$conf_options -DENABLE_ASAN=ON"
;;
garbageinj)
conf_options="$conf_options -DENABLE_GARBAGE_INJECTOR=ON"
;;
garbageinjv)
conf_options="$conf_options -DENABLE_VCLUSTER_GARBAGE_INJECTOR=ON"
;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--enable-$ac_useropt_orig"
ac_unrecognized_sep=', '
;;
esac
eval enable_$ac_useropt=\$ac_optarg ;;
-exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
| --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
| --exec | --exe | --ex)
ac_prev=exec_prefix ;;
-exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \
| --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \
| --exec=* | --exe=* | --ex=*)
exec_prefix=$ac_optarg ;;
-gas | --gas | --ga | --g)
# Obsolete; use --with-gas.
with_gas=yes ;;
-help | --help | --hel | --he | -h)
ac_init_help=long ;;
-help=r* | --help=r* | --hel=r* | --he=r* | -hr*)
ac_init_help=recursive ;;
-help=s* | --help=s* | --hel=s* | --he=s* | -hs*)
ac_init_help=short ;;
-host | --host | --hos | --ho)
ac_prev=host_alias ;;
-host=* | --host=* | --hos=* | --ho=*)
host_alias=$ac_optarg ;;
-htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
ac_prev=htmldir ;;
-htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
| --ht=*)
htmldir=$ac_optarg ;;
-includedir | --includedir | --includedi | --included | --include \
| --includ | --inclu | --incl | --inc)
ac_prev=includedir ;;
-includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \
| --includ=* | --inclu=* | --incl=* | --inc=*)
includedir=$ac_optarg ;;
-infodir | --infodir | --infodi | --infod | --info | --inf)
ac_prev=infodir ;;
-infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*)
infodir=$ac_optarg ;;
-libdir | --libdir | --libdi | --libd)
ac_prev=libdir ;;
-libdir=* | --libdir=* | --libdi=* | --libd=*)
libdir=$ac_optarg ;;
-libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \
| --libexe | --libex | --libe)
ac_prev=libexecdir ;;
-libexecdir=* | --libexecdir=* | --libexecdi=* | --libexecd=* | --libexec=* \
| --libexe=* | --libex=* | --libe=*)
libexecdir=$ac_optarg ;;
-localedir | --localedir | --localedi | --localed | --locale)
ac_prev=localedir ;;
-localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
localedir=$ac_optarg ;;
-localstatedir | --localstatedir | --localstatedi | --localstated \
| --localstate | --localstat | --localsta | --localst | --locals)
ac_prev=localstatedir ;;
-localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
| --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
localstatedir=$ac_optarg ;;
-mandir | --mandir | --mandi | --mand | --man | --ma | --m)
ac_prev=mandir ;;
-mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)
mandir=$ac_optarg ;;
-nfp | --nfp | --nf)
# Obsolete; use --without-fp.
with_fp=no ;;
-no-create | --no-create | --no-creat | --no-crea | --no-cre \
| --no-cr | --no-c | -n)
no_create=yes ;;
-no-recursion | --no-recursion | --no-recursio | --no-recursi \
| --no-recurs | --no-recur | --no-recu | --no-rec | --no-re | --no-r)
no_recursion=yes ;;
-oldincludedir | --oldincludedir | --oldincludedi | --oldincluded \
| --oldinclude | --oldinclud | --oldinclu | --oldincl | --oldinc \
| --oldin | --oldi | --old | --ol | --o)
ac_prev=oldincludedir ;;
-oldincludedir=* | --oldincludedir=* | --oldincludedi=* | --oldincluded=* \
| --oldinclude=* | --oldinclud=* | --oldinclu=* | --oldincl=* | --oldinc=* \
| --oldin=* | --oldi=* | --old=* | --ol=* | --o=*)
oldincludedir=$ac_optarg ;;
-prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
ac_prev=prefix ;;
-prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*)
prefix=$ac_optarg
conf_options="$conf_options -DCMAKE_INSTALL_PREFIX=$ac_optarg"
echo "$prefix" > install_dir
;;
-program-prefix | --program-prefix | --program-prefi | --program-pref \
| --program-pre | --program-pr | --program-p)
ac_prev=program_prefix ;;
-program-prefix=* | --program-prefix=* | --program-prefi=* \
| --program-pref=* | --program-pre=* | --program-pr=* | --program-p=*)
program_prefix=$ac_optarg ;;
-program-suffix | --program-suffix | --program-suffi | --program-suff \
| --program-suf | --program-su | --program-s)
ac_prev=program_suffix ;;
-program-suffix=* | --program-suffix=* | --program-suffi=* \
| --program-suff=* | --program-suf=* | --program-su=* | --program-s=*)
program_suffix=$ac_optarg ;;
-program-transform-name | --program-transform-name \
| --program-transform-nam | --program-transform-na \
| --program-transform-n | --program-transform- \
| --program-transform | --program-transfor \
| --program-transfo | --program-transf \
| --program-trans | --program-tran \
| --progr-tra | --program-tr | --program-t)
ac_prev=program_transform_name ;;
-program-transform-name=* | --program-transform-name=* \
| --program-transform-nam=* | --program-transform-na=* \
| --program-transform-n=* | --program-transform-=* \
| --program-transform=* | --program-transfor=* \
| --program-transfo=* | --program-transf=* \
| --program-trans=* | --program-tran=* \
| --progr-tra=* | --program-tr=* | --program-t=*)
program_transform_name=$ac_optarg ;;
-pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
ac_prev=pdfdir ;;
-pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
pdfdir=$ac_optarg ;;
-psdir | --psdir | --psdi | --psd | --ps)
ac_prev=psdir ;;
-psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
psdir=$ac_optarg ;;
-q | -quiet | --quiet | --quie | --qui | --qu | --q \
| -silent | --silent | --silen | --sile | --sil)
silent=yes ;;
-sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb)
ac_prev=sbindir ;;
-sbindir=* | --sbindir=* | --sbindi=* | --sbind=* | --sbin=* \
| --sbi=* | --sb=*)
sbindir=$ac_optarg ;;
-sharedstatedir | --sharedstatedir | --sharedstatedi \
| --sharedstated | --sharedstate | --sharedstat | --sharedsta \
| --sharedst | --shareds | --shared | --share | --shar \
| --sha | --sh)
ac_prev=sharedstatedir ;;
-sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \
| --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \
| --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \
| --sha=* | --sh=*)
sharedstatedir=$ac_optarg ;;
-site | --site | --sit)
ac_prev=site ;;
-site=* | --site=* | --sit=*)
site=$ac_optarg ;;
-srcdir | --srcdir | --srcdi | --srcd | --src | --sr)
ac_prev=srcdir ;;
-srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*)
srcdir=$ac_optarg ;;
-sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \
| --syscon | --sysco | --sysc | --sys | --sy)
ac_prev=sysconfdir ;;
-sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \
| --syscon=* | --sysco=* | --sysc=* | --sys=* | --sy=*)
sysconfdir=$ac_optarg ;;
-target | --target | --targe | --targ | --tar | --ta | --t)
ac_prev=target_alias ;;
-target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*)
target_alias=$ac_optarg ;;
-v | -verbose | --verbose | --verbos | --verbo | --verb)
verbose=yes ;;
-version | --version | --versio | --versi | --vers | -V)
ac_init_version=: ;;
-with-* | --with-*)
ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_useropt in
cuda_on_backend)
conf_options="$conf_options -DCUDA_ON_BACKEND=$ac_optarg"
;;
libhilbert)
conf_options="$conf_options -DLIBHILBERT_ROOT=$ac_optarg"
;;
metis)
conf_options="$conf_options -DMETIS_ROOT=$ac_optarg"
;;
parmetis)
conf_options="$conf_options -DPARMETIS_ROOT=$ac_optarg"
;;
hdf5)
conf_options="$conf_options -DHDF5_ROOT=$ac_optarg"
;;
petsc)
conf_options="$conf_options -DPETSC_ROOT=$ac_optarg"
;;
blas)
conf_options="$conf_options -DOPENBLAS_ROOT=$ac_optarg"
;;
suitesparse)
conf_options="$conf_options -DSUITESPARSE_ROOT=$ac_optarg"
ld_lib_pathopt=$ac_optarg/lib
;;
eigen)
conf_options="$conf_options -DEIGEN3_ROOT=$ac_optarg"
;;
boost)
conf_options="$conf_options -DBOOST_ROOT=$ac_optarg -DBoost_NO_BOOST_CMAKE=ON"
;;
action_on_error)
conf_options="$conf_options -DACTION_ON_ERROR=$ac_optarg"
;;
mpivendor)
conf_options="$conf_options -DMPI_VENDOR=$ac_optarg"
;;
vcdevel)
conf_options="$conf_options -DVc_ROOT=$ac_optarg"
;;
alpaka)
conf_options="$conf_options -DALPAKA_ROOT=$ac_optarg"
;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--with-$ac_useropt_orig"
ac_unrecognized_sep=', ';;
esac
eval with_$ac_useropt=\$ac_optarg ;;
-without-* | --without-*)
ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
*"
"with_$ac_useropt"
"*) ;;
*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--without-$ac_useropt_orig"
ac_unrecognized_sep=', ';;
esac
eval with_$ac_useropt=no ;;
--x)
# Obsolete; use --with-x.
with_x=yes ;;
-x-includes | --x-includes | --x-include | --x-includ | --x-inclu \
| --x-incl | --x-inc | --x-in | --x-i)
ac_prev=x_includes ;;
-x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \
| --x-incl=* | --x-inc=* | --x-in=* | --x-i=*)
x_includes=$ac_optarg ;;
-x-libraries | --x-libraries | --x-librarie | --x-librari \
| --x-librar | --x-libra | --x-libr | --x-lib | --x-li | --x-l)
ac_prev=x_libraries ;;
-x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \
| --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
x_libraries=$ac_optarg ;;
-*) as_fn_error $? "unrecognized option: \`$ac_option'
Try \`$0 --help' for more information"
;;
*=*)
ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
# Reject names that are not valid shell variable names.
case $ac_envvar in #(
'' | [0-9]* | *[!_$as_cr_alnum]* )
as_fn_error $? "invalid variable name: \`$ac_envvar'" ;;
esac
eval $ac_envvar=\$ac_optarg
export $ac_envvar ;;
*)
# FIXME: should be removed in autoconf 3.0.
$as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2
expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
$as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
: "${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}"
;;
esac
done
if [ x"$debug_mode" != x"1" ]; then
conf_options="$conf_options -DCMAKE_BUILD_TYPE=Release"
fi
cd build
## remove enerything
echo "Calling cmake ../. $conf_options"
printf "cmake ../. $conf_options" > cmake_build_options
rm ../error_code
DYLD_LIBRARY_PATH=$ld_lib_pathopt cmake ../. $conf_options
if [ $? != 0 ]; then
#ok something went wrong the install script analyze the return code to potentially fix the problem automatically
# Read the error code and exit with that
if [ -f ../error_code ]; then
ecod=$(cat ../error_code)
if [ x"$ecod" == x"0" ]; then
exit 1
else
echo "Analyze error $ecod"
exit $ecod
fi
else
exit 1
fi
fi
cd ..
echo "all:
\$(MAKE) -C build \$@
clean:
\$(MAKE) -C build \$@
install:
\$(MAKE) -C build \$@
script/install_parallel_debugger
pdata:
\$(MAKE) -C build \$@
numerics:
\$(MAKE) -C build \$@
.PHONY: all clean install" > Makefile
echo "$0 $@" > config.log
discover_os deleted 100755 → 0
View file @ a2cb5096
#! /bin/bash
function discover_os() {
platform=unknown
arch=$(uname -m)
if [[ "$OSTYPE" == "linux-gnu" ]]; then
echo -e "We are on\033[1;34m LINUX \033[0m, with architecture \033[1;34m$arch\033[0m"
platform=linux
elif [[ "$OSTYPE" == "linux" ]]; then
echo -e "We are on\033[1;34m LINUX \033[0m, with architecture \033[1;34m$arch\033[0m"
platform=linux
elif [[ "$OSTYPE" == "darwin"* ]]; then
echo -e "We are on\033[1;34m MAC OSX \033[0m, with architecture \033[1;34m$arch\033[0m"
platform=osx
elif [[ "$OSTYPE" == "cygwin" ]]; then
echo -e "We are on\033[1;34m CYGWIN \033[0m, with architecture \033[1;34m$arch\033[0m"
platform=cygwin
elif [[ "$OSTYPE" == "msys" ]]; then
echo -e "We are on\033[1;34m Microsoft Window \033[0m, with architecture \033[1;34m$arch\033[0m"
echo "This platform is not supported"
exit 1
elif [[ "$OSTYPE" == "win32" ]]; then
echo -e "We are on\033[1;34m Microsoft Window \033[0m, with architecture \033[1;34m$arch\033[0m"
echo "This platform is not supported"
exit 1
elif [[ "$OSTYPE" == "freebsd"* ]]; then
echo -e "We are on\033[1;34m FREEBSD \033[0m, with architecture \033[1;34m$arch\033[0m"
echo "This platform is not supported"
exit 1
else
echo -e "We are on an\033[1;34m unknown OS \033[0m, with architecture \033[1;34m$arch\033[0m"
echo "This platform is not supported"
exit 1
fi
}
install_BOOST.sh deleted 100755 → 0
View file @ a2cb5096
#!/bin/bash
source discover_os
discover_os
# check if the directory $1/BOOST exist
if [ -d "$1/BOOST" ]; then
echo "BOOST already installed"
exit 0
fi
rm boost_1_75_0.tar.bz2
wget http://ppmcore.mpi-cbg.de/upload/boost_1_75_0.tar.bz2
tar -xf boost_1_75_0.tar.bz2
cd boost_1_75_0
if [ x"$4" != x"" ]; then
if [ -f $HOME/user-config.jam ]; then
mv $HOME/user-config.jam $HOME/user-config.jam_bck
fi
if [ x"$5" != x"" ]; then
echo "using gcc : $5.$6 : $4 ; " > $HOME/user-config.jam
else
echo "using gcc : : $4 ; " > $HOME/user-config.jam
fi
fi
./bootstrap.sh --with-toolset=$3
mkdir $1/BOOST
# Several flavours
if [ x"$platform" == x"osx" ]; then
if [ x"$arch" == x"arm64" ]; then
if [ x"$3" == x"" ]; then
./b2 -j $2 install --prefix=$1/BOOST address-model=64 architecture=arm abi=aapcs binary-format=mach-o toolset=clang -sNO_LZMA=1 -sNO_ZSTD=1
else
./b2 -j $2 install --prefix=$1/BOOST address-model=64 architecture=arm abi=aapcs binary-format=mach-o toolset=$3 -sNO_LZMA=1 -sNO_ZSTD=1
fi
else
./b2 -j $2 install --prefix=$1/BOOST address-model=64 architecture=x86 abi=sysv binary-format=mach-o toolset=clang -sNO_LZMA=1 -sNO_ZSTD=1
fi
else
./b2 -j $2 install --prefix=$1/BOOST -sNO_LZMA=1 -sNO_ZSTD=1
fi
rm -rf boost_1_75_0
if [ -f $HOME/user-config.jam_bck ]; then
mv $HOME/user-config.jam_bck $HOME/user-config.jam
fi
rm -rf boost_1_75_0.tar.bz2
install_CMAKE_on_CI.sh deleted 100755 → 0
View file @ a2cb5096
#!/bin/bash
if [ -d "$1/CMAKE" ]; then
exit 0
fi
wget https://github.com/Kitware/CMake/releases/download/v3.20.3/cmake-3.20.3.tar.gz
tar -xvf cmake-3.20.3.tar.gz
cd cmake-3.20.3
./bootstrap --prefix=$1/CMAKE
make
make install
install_HDF5.sh deleted 100755 → 0
View file @ a2cb5096
#! /bin/bash
source script/discover_os
discover_os
# check if the directory $1/HDF5 exist
if [ -d "$1/HDF5" -a -f "$1/HDF5/include/hdf5.h" ]; then
echo "HDF5 is already installed"
exit 0
fi
if [ ! -d "$1/ZLIB" -a x"$platform" != x"cygwin" ]; then
rm zlib-1.2.11.tar.gz
rm -rf zlib-1.2.11
wget https://zlib.net/zlib-1.2.11.tar.gz
if [ $? -ne 0 ]; then
echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
exit 1
fi
tar -xf zlib-1.2.11.tar.gz
cd zlib-1.2.11
CC=mpicc ./configure --prefix=$1/ZLIB
make -j $2
cd ..
if [ $? -eq 0 ]; then
make check install
else
echo -e "\033[91;5;1m ZLIB Installation FAILED \033[0m"
exit 1
fi
else
echo "ZLIB is already installed"
fi
### 1.8.19 does not compile on CYGWIN
wget http://ppmcore.mpi-cbg.de/upload/hdf5-1.10.7.tar.gz
tar -xf hdf5-1.10.7.tar.gz
cd hdf5-1.10.7
if [ x"$platform" != x"cygwin" ]; then
CC=mpicc ./configure --with-zlib=$1/ZLIB --enable-parallel --prefix=$1/HDF5
make -j $2
else
CC=mpicc ./configure --enable-parallel --prefix=$1/HDF5
make CFLAGS=-D_POSIX_C_SOURCE -j $2
fi
mkdir $1/HDF5
make install
if [ $? -ne 0 ]; then
echo "HDF5 error installing"
exit 0
fi
echo 3 > $1/HDF5/version
install_LIBHILBERT.sh deleted 100755 → 0
View file @ a2cb5096
#! /bin/bash
# check if the directory $1/HDF5 exist
if [ -d "$1/LIBHILBERT" ]; then
echo "LIBHILBERT already installed"
exit 0
fi
wget http://ppmcore.mpi-cbg.de/upload/libhilbert-master.tar.gz
rm -rf libhilbert-master
tar -xf libhilbert-master.tar.gz
cd libhilbert-master
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX:PATH=$1/LIBHILBERT ..
make all
make install
install_MPI.sh deleted 100755 → 0
View file @ a2cb5096
#!/bin/bash
# check if the directory $1/MPI exist
if [ -d "$1/MPI" ]; then
echo "MPI already installed"
exit 0
fi
./script/download_MPI.sh
cd openmpi-4.1.1
if [ -f ../mpi_add_options ]; then
mpi_options=$(cat ../mpi_add_options)
echo "Adding MPI options: $mpi_options"
fi
if [ x"$3" == x"1" ]; then
echo "Installing MPI with GPU support"
# Detect where is nvcc
cuda_location=$(dirname $(dirname $(which nvcc)) )
./configure --with-hwloc=internal --with-libevent=internal $mpi_options --with-cuda=$cuda_location --prefix=$1/MPI --enable-mpi-fortran=yes CC=$4 CXX=$5 F77=$6 FC=$7 $8
else
echo "Installing MPI without GPU support"
./configure --with-hwloc=internal --with-libevent=internal $mpi_options --prefix=$1/MPI --enable-mpi-fortran=yes CC=$4 CXX=$5 F77=$6 FC=$7 $8
fi
make -j $2
make install
# Mark the installation
echo 10 > $1/MPI/version
install_MPI_mpich.sh deleted 100755 → 0
View file @ a2cb5096
#!/bin/bash
# check if the directory $1/MPI exist
if [ -d "$1/MPI" ]; then
echo "MPI already installed"
exit 0
fi
rm -rf mpich-3.4.2
rm mpich-3.4.2.tar.gz
wget http://ppmcore.mpi-cbg.de/upload/mpich-3.4.2.tar.gz
tar -xvf mpich-3.4.2.tar.gz
cd mpich-3.4.2
#
# --disable-mca-dso \
# --disable-sysv-shmem \
# --enable-cxx-exceptions \
# --with-threads=posix \
# --without-cs-fs \
# --with-mpi-param_check=always \
# --enable-contrib-no-build=vt,libompitrace \
#
#--enable-mca-no-build=paffinity,installdirs-windows,timer-windows,shmem-sysv
#
#
if [ x"$6" == x"1" ]; then
echo "Installing MPI with GPU support"
./configure --prefix=$1/MPI --enable-fortran CC=$3 CXX=$4 F77=$5 FC=$5 FFLAGS=-fallow-argument-mismatch
else
echo "Installing MPI without GPU support"
./configure --prefix=$1/MPI --enable-fortran CC=$3 CXX=$4 F77=$5 FC=$5 FFLAGS=-fallow-argument-mismatch
fi
make -j $2
make install
# Mark the installation
echo 4 > $1/MPI/version