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Similarity/Homology Assessment by Relating K-mers

A collection of tools to process and manipulate high-throughput sequencing data

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Documentations for CD-CODE project

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Web frontend (VueJs) and CMS (Strapi)

openfpm_pdata

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Backend APIs (Flask) exposing data from database in RESTful format

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

polishing pipelines

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Simulation of virus transmission between cells

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation