GitLab

A collection of tools to process and manipulate high-throughput sequencing data

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

collections of hackyhour examples and documentation

CrowDsourcing COndensate Database and Encyclopedia

Web frontend (VueJs) and CMS (Strapi)

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

MotionTracking project to Analyze Hepatocyte Cages.

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

hyrdrodynamics methods for kirchhoff graphs

Code used to prepare events plots for controls and morpholinos experiments for lineage analysis

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)