GitLab

A collection of tools to process and manipulate high-throughput sequencing data

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

collections of hackyhour examples and documentation

openfpm_pdata

This repository is all about simulating flow driven pruning in biological flow networks.

Filter .fasta file by accession Number

drop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

MATLAB implementation of image naturalization

hyrdrodynamics methods for kirchhoff graphs

real-time in-situ visualization of distributed numerical simulations

MATLAB Toolbox for cell-outline segmentation in phase-contrast images

Complementary information to the image analysis script described in the paper "Salamander Eci: an optical clearing protocol for the three-dimensional exploration of regeneration".

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Image analysis course (4.5h): Concepts and hands-on with Fiji.