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Similarity/Homology Assessment by Relating K-mers

Web frontend (VueJs) and CMS (Strapi)

openfpm_pdata

Documentations for CD-CODE project

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Backend APIs (Flask) exposing data from database in RESTful format

A collection of tools to process and manipulate high-throughput sequencing data

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

Setting up a python3 installation to run standalone... or with your code

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

polishing pipelines

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

Library for producing and processing on the Adaptive Particle Representation (APR)

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021