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Similarity/Homology Assessment by Relating K-mers

openfpm_pdata

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

A collection of tools to process and manipulate high-throughput sequencing data

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Web frontend (VueJs) and CMS (Strapi)

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Backend APIs (Flask) exposing data from database in RESTful format

Documentations for CD-CODE project

Setting up a python3 installation to run standalone... or with your code

polishing pipelines

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

useful functionality for image-, data-analysis and classification of stembryos