GitLab

A collection of tools to process and manipulate high-throughput sequencing data

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

collections of hackyhour examples and documentation

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Web frontend (VueJs) and CMS (Strapi)

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Backend APIs (Flask) exposing data from database in RESTful format

Improving contrast in confocal data by degrading image with model of light scattering

Documentations for CD-CODE project

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.