feat: SHARK-dive: Write output file to cwd
Actual behaviour:
I was running shark-dive yesterday, after using the new pip install function, and I noticed that the output file was store in the following location by default:
/Users/maxim/PycharmProjects/shark/shark-env/lib/python3.11/site-packages/bio_shark/../data/shark_dive_predict_out__sample_fasta_file.fasta_sample_fasta_file.fasta.csv
Expected behaviour:
Store the result file in the current working directory (cwd) and on top introduce a new output file program option to store the file to a custom location.