Fixing pata

configure.ac

@@ -167,6 +167,29 @@ if test x"$scancoverty" = x"yes"; then
 fi
 
 
+###### Checking for compiler flags -fext-numeric-literals
+
+AC_LANG_PUSH([C++])
+
+my_save_cflags="$CXXFLAGS"
+CXXFLAGS=-fext-numeric-literals
+AC_MSG_CHECKING([whether CXX supports -fext-numeric-literals])
+AC_COMPILE_IFELSE([AC_LANG_PROGRAM([])],
+    [AC_MSG_RESULT([yes])],
+    [
+     AM_CXXFLAGS=-fext-numeric-literals
+     echo "-fext-numeric-literals" > config_opt
+    ],
+    [
+     AC_MSG_RESULT([no]),
+     echo "" > config_opt
+    ]
+)
+AC_LANG_POP([C++])
+CXXFLAGS="$my_save_cflags"
+AC_SUBST([AM_CXXFLAGS])
+
+
 ## Check for parMetis
 
 IMMDX_LIB_PARMETIS([],[echo "Cannot detect parmetis, use the --with-parmetis option if it is not installed in the default location"

images/Makefile.am

@@ -2,22 +2,22 @@ LINKLIBS = $(LIBHILBERT_LIB) $(PETSC_LIB) $(METIS_LIB) $(PARMETIS_LIB)  $(PTHREA
 
 noinst_PROGRAMS = cart_dec metis_dec dom_box vector_dist
 cart_dec_SOURCES = CartDecomposition_gen_vtk.cpp ../src/lib/pdata.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/Memleak_check.cpp
-cart_dec_CXXFLAGS = $(PETSC_INCLUDE) $(METIS_INCLUDE) $(PARMETIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
+cart_dec_CXXFLAGS = $(AM_CXXFLAGS) $(PETSC_INCLUDE) $(METIS_INCLUDE) $(PARMETIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
 cart_dec_CFLAGS = $(CUDA_CFLAGS)
 cart_dec_LDADD = $(LINKLIBS) -lparmetis -lmetis
 
 metis_dec_SOURCES = Metis_gen_vtk.cpp ../src/lib/pdata.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/Memleak_check.cpp
-metis_dec_CXXFLAGS = $(PETSC_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
+metis_dec_CXXFLAGS = $(AM_CXXFLAGS) $(PETSC_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
 metis_dec_CFLAGS = $(CUDA_CFLAGS)
 metis_dec_LDADD = $(LINKLIBS) -lmetis
 
 dom_box_SOURCES = domain_gen_vtk.cpp ../src/lib/pdata.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/Memleak_check.cpp
-dom_box_CXXFLAGS = $(PETSC_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
+dom_box_CXXFLAGS = $(AM_CXXFLAGS) $(PETSC_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
 dom_box_CFLAGS = $(CUDA_CFLAGS)
 dom_box_LDADD = $(LINKLIBS)
 
 vector_dist_SOURCES = vector.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/memory/PtrMemory.cpp
-vector_dist_CXXFLAGS = $(LIBHILBERT_INCLUDE) $(PETSC_INCLUDE) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(HDF5_CPPFLAGS) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
+vector_dist_CXXFLAGS = $(AM_CXXFLAGS) $(LIBHILBERT_INCLUDE) $(PETSC_INCLUDE) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(HDF5_CPPFLAGS) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
 vector_dist_CFLAGS = $(CUDA_CFLAGS)
 vector_dist_LDADD = $(LINKLIBS) -lparmetis -lmetis
 

src/Makefile.am

@@ -2,7 +2,7 @@ LINKLIBS = $(LIBHILBERT_LIB)  $(METIS_LIB) $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_L
 
 noinst_PROGRAMS = pdata
 pdata_SOURCES = main.cpp Grid/grid_dist_id_unit_test.cpp  lib/pdata.cpp test_multiple_o.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/Memleak_check.cpp
-pdata_CXXFLAGS = $(LIBHILBERT_INCLUDE) $(PETSC_INCLUDE) $(HDF5_CPPFLAGS) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(BOOST_CPPFLAGS) $(H5PART_INCLUDE) -DPARALLEL_IO  -Wno-unused-local-typedefs
+pdata_CXXFLAGS = $(AM_CXXFLAGS) $(LIBHILBERT_INCLUDE) $(PETSC_INCLUDE) $(HDF5_CPPFLAGS) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(BOOST_CPPFLAGS) $(H5PART_INCLUDE) -DPARALLEL_IO  -Wno-unused-local-typedefs
 pdata_CFLAGS = $(CUDA_CFLAGS)
 pdata_LDADD = $(LINKLIBS) -lparmetis -lmetis
 nobase_include_HEADERS = Decomposition/CartDecomposition.hpp Decomposition/CartDecomposition_ext.hpp  Decomposition/common.hpp Decomposition/Decomposition.hpp  Decomposition/ie_ghost.hpp \