Forcing install mpich on centos + fixing installation of PETSC on centos

build.sh

@@ -14,10 +14,15 @@ echo "make target: $target"
 echo "compilation type: $comp_type"
 echo "Branch name: $branch"
 
-#if [ x"$hostname" == x"cifarm-centos-node.mpi-cbg.de"  ]; then
+if [ x"$hostname" == x"cifarm-centos-node.mpi-cbg.de"  ]; then
 	#we retest PETSC installation
-#        rm -rf $HOME/openfpm_dependencies/openfpm_pdata/$branch/PETSC
-#fi
+        rm -rf $HOME/openfpm_dependencies/openfpm_pdata/$branch/PETSC
+	rm -rf $HOME/openfpm_dependencies/openfpm_pdata/$branch/MPI
+	rm -rf $HOME/openfpm_dependencies/openfpm_pdata/$branch/PARMETIS
+	rm -rf $HOME/openfpm_dependencies/openfpm_pdata/$branch/HDF5
+
+	install_MPI_mpich.sh $HOME/openfpm_dependencies/openfpm_pdata/$branch/ 4
+fi
 
 if [ x"$hostname" == x"cifarm-mac-node.mpi-cbg.de"  ]; then
 	export PATH="/usr/local/bin:$PATH"

install_MPI_mpich.sh

+#!/bin/bash
+
+# check if the directory $1/MPI exist
+
+if [ -d "$1/MPI" ]; then
+  echo "MPI already installed"
+  exit 0
+fi
+rm -rf mpich-3.3
+rm mpich-3.3.tar.gz
+wget http://ppmcore.mpi-cbg.de/upload/mpich-3.3.tar.gz
+tar -xvf mpich-3.3.tar.gz
+cd mpich-3.3
+
+#
+#                  --disable-mca-dso \
+#                 --disable-sysv-shmem \
+#                 --enable-cxx-exceptions \
+#                 --with-threads=posix \
+#                 --without-cs-fs \
+#                 --with-mpi-param_check=always \
+#                 --enable-contrib-no-build=vt,libompitrace \
+#
+#--enable-mca-no-build=paffinity,installdirs-windows,timer-windows,shmem-sysv
+#
+#
+
+
+if [ x"$6" == x"1" ]; then
+   echo "Installing MPI with GPU support"
+  ./configure --prefix=$1/MPI --enable-fortran CC=$3 CXX=$4 F77=$5 FC=$5
+else
+  echo "Installing MPI without GPU support"
+  ./configure --prefix=$1/MPI --enable-fortran CC=$3 CXX=$4 F77=$5 FC=$5
+fi
+make -j $2
+make install
+
+# Mark the installation
+echo 4 > $1/MPI/version
+

script/install_MPI.sh

@@ -6,11 +6,11 @@ if [ -d "$1/MPI" ]; then
   echo "MPI already installed"
   exit 0
 fi
-rm -rf openmpi-3.1.3
-rm openmpi-3.1.3.tar.gz
-wget http://ppmcore.mpi-cbg.de/upload/openmpi-3.1.3.tar.gz
-tar -xvf openmpi-3.1.3.tar.gz
-cd openmpi-3.1.3
+rm -rf mpich-3.3
+rm mpich-3.3.tar.gz
+wget http://ppmcore.mpi-cbg.de/upload/mpich-3.3.tar.gz
+tar -xvf mpich-3.3.tar.gz
+cd mpich-3.3
 
 #
 #                  --disable-mca-dso \

script/install_PETSC.sh

@@ -19,7 +19,9 @@ source script/solve_python
 discover_os
 
 function test_configure_options() {
+  cd petsc-3.10.2
   $python_command ./configure COPTFLAGS="-O3 -g" CXXOPTFLAGS="-O3 -g" FOPTFLAGS="-O3 -g" $ldflags_petsc  --with-cxx-dialect=C++11 $petsc_openmp --with-mpi-dir=$mpi_dir $configure_options2 --with-debugging=0
+  cd ..
 }
 
 function haveProg() {
@@ -44,6 +46,16 @@ else
   ldflags_petsc=
 fi
 
+#### Download and uncompress petsc
+
+rm petsc-lite-3.10.2.tar.gz
+rm -rf petsc-3.10.2
+wget http://ppmcore.mpi-cbg.de/upload/petsc-lite-3.10.2.tar.gz
+if [ $? -ne 0 ]; then
+  echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
+  exit 1
+fi
+tar -xf petsc-lite-3.10.2.tar.gz
 
 ####