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Commit c29f3960 authored by Pietro Incardona's avatar Pietro Incardona
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Fixing SUITESPARSE installation

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script/install_PETSC.sh
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View file @ c29f3960
......@@ -48,25 +48,12 @@ fi
MUMPS_extra_libs=""
configure_options=""
configure_options_scalapack=""
configure_options_superlu=""
configure_trilinos_options=" -D TPL_ENABLE_MPI=ON "
configure_options_hypre=""
### Here we install OpenBLAS and SUITESPARSE
#if [ -d "$1/PARMETIS" ]; then
# if [ x"$CXX" != x"icpc" ]; then
# configure_options="$configure_options --with-parmetis=yes --with-parmetis-dir=$1/PARMETIS "
# fi
# configure_options_superlu="-DTPL_PARMETIS_INCLUDE_DIRS=$1/PARMETIS/include;$1/METIS/include -DTPL_PARMETIS_LIBRARIES=$1/PARMETIS/lib/libparmetis.a;$1/METIS/lib/libmetis.so $configure_options_superlu"
#fi
#if [ -d "$1/METIS" ]; then
# configure_options="$configure_options --with-metis=yes --with-metis-dir=$1/METIS "
#fi
configure_options="$configure_options --download-metis --download-parmetis"
if [ -d "$1/BOOST" ]; then
......@@ -92,22 +79,12 @@ if [ ! -d "$1/OPENBLAS" ]; then
configure_trilinos_options="$configure_trilinos_options -D TPL_ENABLE_BLAS=ON -D BLAS_LIBRARY_NAMES=openblas -D BLAS_LIBRARY_DIRS=$1/OPENBLAS/lib -D TPL_ENABLE_LAPACK=ON -D LAPACK_LIBRARY_NAMES=openblas -D LAPACK_LIBRARY_DIRS=$1/OPENBLAS/lib -D TPL_ENABLE_Netcdf=OFF -DTPL_ENABLE_GLM=OFF -D TPL_ENABLE_X11=OFF "
configure_options_superlu="$configure_options_superlu -Denable_blaslib=OFF -DTPL_BLAS_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a "
configure_options_hypre="--with-blas-libs=-lopenblas --with-blas-lib-dirs=$1/OPENBLAS/lib --with-lapack-libs=-lopenblas --with-lapack-lib-dirs=$1/OPENBLAS/lib "
if [ x"$CXX" == x"icpc" -a x"$platform" != x"OSX" ]; then
configure_options_scalapack="$configure_options_scalapack -D LAPACK_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a -D BLAS_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a;libgfortran.so "
else
configure_options_scalapack="$configure_options_scalapack -D LAPACK_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a -D BLAS_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a"
fi
fi
else
configure_options="$configure_options --with-blas-lib=$1/OPENBLAS/lib/libopenblas.a --with-lapack-lib=$1/OPENBLAS/lib/libopenblas.a"
configure_trilinos_options="$configure_trilinos_options -D TPL_ENABLE_BLAS=ON -D BLAS_LIBRARY_NAMES=openblas -D BLAS_LIBRARY_DIRS=$1/OPENBLAS/lib -D TPL_ENABLE_LAPACK=ON -D LAPACK_LIBRARY_NAMES=openblas -D LAPACK_LIBRARY_DIRS=$1/OPENBLAS/lib -D TPL_ENABLE_Netcdf=OFF -DTPL_ENABLE_GLM=OFF -D TPL_ENABLE_X11=OFF "
configure_options_superlu="$configure_options_superlu -Denable_blaslib=OFF -DTPL_BLAS_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a "
configure_options_hypre="--with-blas-libs=-lopenblas --with-blas-lib-dirs=$1/OPENBLAS/lib --with-lapack-libs=-lopenblas --with-lapack-lib-dirs=$1/OPENBLAS/lib "
if [ x"$CXX" == x"icpc" -a x"$platform" != x"OSX" ]; then
configure_options_scalapack="$configure_options_scalapack -D LAPACK_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a -D BLAS_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a;libgfortran.so "
else
configure_options_scalapack="$configure_options_scalapack -D LAPACK_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a -D BLAS_LIBRARIES=$1/OPENBLAS/lib/libopenblas.a"
fi
fi
if [ ! -d "$1/SUITESPARSE" ]; then
......@@ -119,229 +96,8 @@ else
configure_options="$configure_options --with-suitesparse=yes --with-suitesparse-dir=$1/SUITESPARSE "
fi
# Install NETCFD
#if [ -d "$1/NETCDF" ]; then
# echo "NETCDF is already installed"
# configure_options="$configure_options --with-netcdf=yes -with-netcdf-dir=$1/NETCDF --with-hdf5=yes --with-hdf5-dir=$1/HDF5 "
#else
# if [ -d "$1/HDF5" ]; then
# configure_options="$configure_options --with-hdf5=yes --with-hdf5-dir=$1/HDF5 "
# else
# ./script/install_HDF5.sh $1 $2
# if [ $? -eq 0 ]; then
# configure_options="$configure_options --with-hdf5=yes --with-hdf5-dir=$1/HDF5 "
# fi
# fi
# rm netcdf-4.4.1.1.tar.gz
# rm -rf netcdf-4.4.1.1
# wget http://ppmcore.mpi-cbg.de/upload/netcdf-4.4.1.1.tar.gz
# if [ $? -ne 0 ]; then
# echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
# exit 1
# fi
# tar -xf netcdf-4.4.1.1.tar.gz
# cd netcdf-4.4.1.1
# if [ -d "$1/HDF5/lib" ]; then
# lib_path="$1/HDF5/lib"
# elif [ -d "$1/HDF5/lib64" ]; then
# lib_path="$1/HDF5/lib64"
# fi
# if [ x"$platform" == x"cygwin" ]; then
# ./configure CC=mpicc CPPFLAGS="-I$1/HDF5/include -I$1/ZLIB/include " LDFLAGS="-L$lib_path -L$1/ZLIB/lib" --disable-netcdf-4 --disable-dap --disable-shared --prefix=$1/NETCDF
# else
# ./configure CC=mpicc CPPFLAGS="-I$1/HDF5/include -I$1/ZLIB/include " LDFLAGS="-L$lib_path -L$1/ZLIB/lib" --disable-dap --disable-shared --prefix=$1/NETCDF
# fi
# make -j $2
# if [ $? -eq 0 ]; then
# make install
# configure_options="$configure_options --with-netcdf=yes -with-netcdf-dir=$1/NETCDF "
# else
# echo -e "\033[91;5;1m FAILED! NETCDF Installation \033[0m"
# exit 1
# fi
#fi
#if [ ! -d "$1/TRILINOS" ]; then
# rm trilinos-12.10.1-Source.tar.gz
# rm -rf trilinos-12.10.1-Source
# wget http://ppmcore.mpi-cbg.de/upload/trilinos-12.10.1-Source.tar.gz
# if [ $? -ne 0 ]; then
# echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
# exit 1
# fi
# tar -xf trilinos-12.10.1-Source.tar.gz
# cd trilinos-12.10.1-Source
# mkdir build
## Apply patch
# wget http://ppmcore.mpi-cbg.de/upload/trilinos_cygwin_comb
# patch -p0 -R < trilinos_cygwin_comb
# cd build
### On clang we have no openMP
# petsc_openmp=""
# if [ x"$CXX" == x"clang++" ]; then
# conf_trl_openmp="-D Trilinos_ENABLE_OpenMP=OFF"
# elif [ x"$CXX" == x"icpc" ]; then
# configure_trilinos_options="$configure_trilinos_options -D Trilinos_ENABLE_Xpetra=OFF -D Trilinos_ENABLE_Amesos2=OFF -D Trilinos_ENABLE_Ifpack2=OFF -D Trilinos_ENABLE_Teko=OFF "
# else
# conf_trl_openmp="-D Trilinos_ENABLE_OpenMP=ON"
# petsc_openmp="--with-openmp=yes"
# fi
# if [ x"$platform" == x"cygwin" ]; then
# configure_trilinos_options="$configure_trilinos_options -D Trilinos_CXX11_FLAGS=-std=gnu++11 "
# fi
# cmake -D CMAKE_INSTALL_PREFIX:PATH=$1/TRILINOS -D CMAKE_BUILD_TYPE=RELEASE $conf_trl_openmp -D Trilinos_ENABLE_TESTS=OFF -D Trilinos_ENABLE_ALL_PACKAGES=ON $configure_trilinos_options ../.
# cmake -D CMAKE_INSTALL_PREFIX:PATH=$1/TRILINOS -D CMAKE_BUILD_TYPE=RELEASE $conf_trl_openmp -D Trilinos_ENABLE_TESTS=OFF -D Trilinos_ENABLE_ALL_PACKAGES=ON $configure_trilinos_options ../.
# make -j $2
# if [ $? -eq 0 ]; then
# make install
# Mark the installation
# echo 1 > $1/TRILINOS/version
# configure_options="$configure_options --with-trilinos=yes -with-trilinos-dir=$1/TRILINOS"
# fi
#else
# echo "Trilinos is already installed"
# configure_options="$configure_options --with-trilinos=yes -with-trilinos-dir=$1/TRILINOS"
#fi
configure_options="$configure_options --download-scalapack --download-mumps"
### MUMPS installation
#if [ x"$CXX" != x"icpc" ]; then
# if [ ! -d "$1/MUMPS" ]; then
# rm MUMPS_5.1.2.tar.gz
# rm -rf MUMPS_5.1.2
# wget http://openfpm.mpi-cbg.de/upload/MUMPS_5.1.2.tar.gz
# if [ $? -ne 0 ]; then
# echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
# exit 1
# fi
# tar -xf MUMPS_5.1.2.tar.gz
# cd MUMPS_5.1.2
# cp Make.inc/Makefile.inc.generic Makefile.inc
# Installation for linux
# $sed_command -i "/CC\s\+=\scc/c\CC = mpicc" Makefile.inc
# $sed_command -i "/FC\s\+=\sf90/c\FC = mpif90" Makefile.inc
# $sed_command -i "/FL\s\+=\sf90/c\FL = mpif90" Makefile.inc
# $sed_command -i "/SCALAP\s\+=\s-lscalapack\s-lblacs/c\SCALAP = -L$1/SCALAPACK/lib -L$1/OPENBLAS/lib -lscalapack" Makefile.inc
# $sed_command -i "/LIBBLAS\s\+=\s\-lopenblas/c\LIBBLAS = -lopenblas" Makefile.inc
# $sed_command -i "/OPTF\s\+=\s\-O/c\OPTF = -fpic -O3" Makefile.inc
# $sed_command -i "/OPTC\s\+=\s\-O\s-I./c\OPTC = -fpic -O3 -I." Makefile.inc
# $sed_command -i "/OPTL\s\+=\s\-O/c\OPTL = -fpic -O3" Makefile.inc
# $sed_command -i "/LIBBLAS\s=\s-lblas/c\LIBBLAS = -lopenblas" Makefile.inc
# $sed_command -i "/INCPAR\s\+=\s\-I\/usr\/include/c\INCPAR =" Makefile.inc
# $sed_command -i "/LIBPAR\s\+=\s\$(SCALAP)\s\-L\/usr\/lib\s\-lmpi/c\LIBPAR = \$(SCALAP)" Makefile.inc
# make -j $2
# if [ $? -eq 0 ]; then
## Copy LIB and include in the target directory
# mkdir $1/MUMPS
# cp -r include $1/MUMPS
# cp -r lib $1/MUMPS
# MUMPS_extra_lib="-L$1/MUMPS/lib -ldmumps -lmumps_common -lpord -pthread "
# configure_options="$configure_options --with-mumps=yes --with-mumps-include=$1/MUMPS/include/"
# fi
# else
# echo "MUMPS is already installed"
# MUMPS_extra_lib="-L$1/MUMPS/lib -ldmumps -lmumps_common -lpord -pthread "
# configure_options="$configure_options --with-mumps=yes --with-mumps-include=$1/MUMPS/include/"
# fi
#fi
## SuperLU installation
#if [ ! -d "$1/SUPERLU_DIST" ]; then
# rm superlu_dist_5.1.3.tar.gz
# rm -rf SuperLU_DIST_5.1.3
# wget http://ppmcore.mpi-cbg.de/upload/superlu_dist_5.1.3.tar.gz
# if [ $? -ne 0 ]; then
# echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
# exit 1
# fi
# tar -xf superlu_dist_5.1.3.tar.gz
# cd SuperLU_DIST_5.1.3
# mkdir build
# cd build
# if [ x"$platform" == x"cygwin" ]; then
# cmake .. -DCMAKE_C_FLAGS="-fPIC -std=c99 " -DTPL_BLAS_LIBRARIES="$1/OPENBLAS/lib/libopenblas.a" -DCMAKE_INSTALL_PREFIX="$1/SUPERLU_DIST" -DTPL_PARMETIS_INCLUDE_DIRS="$1/PARMETIS/include/;$1/METIS/include/" -DTPL_PARMETIS_LIBRARIES="$1/PARMETIS/lib/libparmetis.a;$1/METIS/lib/libmetis.dll.a;-lmpi;-lopen-rte;-lopen-pal"
# else
# cmake .. -DCMAKE_C_FLAGS="-fPIC -std=c99 " -DTPL_BLAS_LIBRARIES="$1/OPENBLAS/lib/libopenblas.a" -DCMAKE_INSTALL_PREFIX="$1/SUPERLU_DIST" -DTPL_PARMETIS_INCLUDE_DIRS="$1/PARMETIS/include/;$1/METIS/include/" -DTPL_PARMETIS_LIBRARIES="$1/PARMETIS/lib/libparmetis.a;$1/METIS/lib/libmetis.so"
# fi
# Installation for linux
# make
# if [ $? -eq 0 ]; then
# make install
# echo 1 > $1/SUPERLU_DIST/version
# if [ x"$CXX" == x"icpc" ]; then
# configure_options="$configure_options"
# else
# configure_options="$configure_options --with-superlu_dist=yes --with-superlu_dist-lib=$1/SUPERLU_DIST/lib/libsuperlu_dist.a --with-superlu_dist-include=$1/SUPERLU_DIST/include/"
# fi
# fi
#else
# echo "SUPERLU is already installed"
# if [ x"$CXX" == x"icpc" ]; then
# configure_options="$configure_options"
# else
# configure_options="$configure_options --with-superlu_dist=yes --with-superlu_dist-lib=$1/SUPERLU_DIST/lib/libsuperlu_dist.a --with-superlu_dist-include=$1/SUPERLU_DIST/include/"
# fi
#fi
configure_options="$configure_options --download-superlu_dist"
## HYPRE installation
#if [ ! -d "$1/HYPRE" ]; then
# rm hypre-2.11.2.tar.gz
# rm -rf hypre-2.11.2
# wget http://ppmcore.mpi-cbg.de/upload/hypre-2.11.2.tar.gz
# if [ $? -ne 0 ]; then
# echo -e "\033[91;5;1m FAILED! Installation requires an Internet connection \033[0m"
# exit 1
# fi
# tar -xf hypre-2.11.2.tar.gz
# cd hypre-2.11.2
#
# cd src
#
# ./configure CC=mpicc CXX=mpic++ CFLAGS=-fpic $configure_options_hypre --prefix=$1/HYPRE
# make -j $2
# if [ $? -eq 0 ]; then
# make install
# echo 1 > $1/HYPRE/version
# configure_options="$configure_options --with-hypre=yes -with-hypre-dir=$1/HYPRE"
# fi
#else
# echo "HYPRE is already installed"
# configure_options="$configure_options --with-hypre=yes -with-hypre-dir=$1/HYPRE"
#fi
configure_options="$configure_options --download-hypre"
rm petsc-lite-3.10.2.tar.gz
......
script/install_SUITESPARSE.sh
+ 1
− 1
View file @ c29f3960
......@@ -34,7 +34,7 @@ if [ x"$platform" == x"cygwin" ]; then
fi
echo "Compiling SuiteSparse without CUDA (old variable $CUDA)"
LDLIBS="$STS_LIB -lm" LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$1/OPENBLAS/lib" make -j $2 "CUDA=no" "BLAS=-L$1/OPENBLAS/lib -lopenblas -pthread" "LAPACK="
LDLIBS="$STS_LIB -lm" LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$1/OPENBLAS/lib" make -j $2 "CUDA=no" "BLAS=-L$1/OPENBLAS/lib -lopenblas -pthread" "LAPACK=-lopenblas"
if [ $? != 0 ]; then
echo "Failed to compile SuiteSparse"
exit 1
......
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