started migration of cluster tools to github

bash/lsf_bioinfo_utils.sh

+
+mmFastqc(){
+    outputDir="fastqc_reports"
+#    filePattern="fastq.gz"
+#    outputDir=$1
+#    filePattern=$2
+    mkdir $outputDir
+    for fastqFile in *fastq *fastq.gz ; do
+        if [ ! -f $fastqFile ]; then
+            continue;
+        fi
+        echo processing $fastqFile
+#        bsub -q medium --J fastqc_$(basename $fastqFile) "fastqc -j /sw/bin/java -o $outputDir -f fastq $fastqFile" | joblist .fastqc_jobs
+        mysub "fastqc__$(basename $fastqFile)" "fastqc -j /sw/bin/java -o $outputDir -f fastq $fastqFile" -q medium  | joblist .fastqc_jobs
+    done
+    wait4jobs .fastqc_jobs
+}
+export -f mmFastqc
+