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Created Aug 07, 2020 by domingue@domingueMaintainer

GSEA

Until now GSEA has been done by @henry using API calls and it was not super efficient. While working on a project I found out that this could be done exclusively with R packages:

  • msigdb, contains the annotations
  • fgsea, does the enrichment analysis

Code for testing in: https://git.mpi-cbg.de/domingue/test_gsea

Edited Aug 18, 2020 by domingue
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