Explore projects

This repository contains source codes and notebook demos for trainin STENCIL-NET.

R utilities for data analysis and bioinformatics

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

useful functionality for image-, data-analysis and classification of stembryos

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

Simulation of virus transmission between cells

openfpm_pdata

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Analysis of ARE in liver tissue. with Julien Delpierre

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

polishing pipelines

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"