GitLab

openfpm_pdata

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group. More information about it can be found on official webpage of MOSAIC group.

scripts related to the publication

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

A collection of tools to process and manipulate high-throughput sequencing data

An R package containing the SCF helper functions

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Scripts written for the paper: "Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway"

Quantitative analysis of diacylglycerol signaling kinetics in single cells

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"