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Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Theory analysis and code for studying Drosophila wing disc eversion

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

openfpm_pdata

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Compartmentalized RNA catalysis in membrane-free coacervate protocells

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Slicing lc ms data into time ... slices, to run lipidxplorer on the slices

A collection of tools to process and manipulate high-throughput sequencing data

Plugin to fit and unwrap ellipsoid surfaces