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This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

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MATLAB code for Gaussian Adaptation: Black-box optimization and adaptive MCMC

A Python library for reducing differential equations and dynamical systems.

A MATLAB implementation of the split-Bregman algorithm for image segmentation

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

MATLAB code for deconvolving snakes

Code repository for various misc plk scripts.

This repository is all about simulating flow driven pruning in biological flow networks.