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PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

A web service for calculating the Levenshtein distance between two sequences

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

real-time in-situ visualization of distributed numerical simulations

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Implementation of the fast curvature filters for images.

Particle Tracking C/Java Source Code

Brownian dynamics simulation of cross-linked filament bundles

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

pCMALib: a parallel FORTRAN 90 library for CMA-ES

PPM client for diffusion on curved surfaces