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Simulation of virus transmission between cells

Exact stochastic simulation of intracellular transport

PPM_RC: Distributed-Memory Parallel Image Segmentation

PPF Library

PPM client for diffusion in complex spaces

PPM client for diffusion on curved surfaces

MATLAB code for Gaussian Adaptation: Black-box optimization and adaptive MCMC

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Forthreads Library

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

gap closing pipeline based on gcpp

openfpm_pdata

Image analysis course (4.5h): Concepts and hands-on with Fiji.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.