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Data Analysis
Image segmentation
README.md
condensate_Segmentation_V4.m
getDataAllFields.m
inPhase_Segmentation_v11.m
README.md

inPhase code repository

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations for protein condensates. The code was used with MATLAB (The MathWorks) 2020b and 2021a.

The image segmentation routine "inPhase_Segmentation_v11.m" uses following subroutines:

  • condensate_Segmentation_V4
  • getDataAllFields.m
  • natsort.m (download via matlab file exchange)
  • createCirclesMask.m (download via matlab file exchange)

The evaluation code uses the OME Bio-Formats package that is available under: https://docs.openmicroscopy.org/bio-formats/6.11.0/users/matlab/index.html

The evaluation code uses natsort by Stephen Cobeldick, available under: https://de.mathworks.com/matlabcentral/fileexchange/47434-natural-order-filename-sort

The evaluation code uses natsort by Brett Shoelson, available under: https://de.mathworks.com/matlabcentral/fileexchange/47905-createcirclesmask