345d78a0 · Comparison with Julia works quite well for all cases with new mesh.

2f57817a · Fix bug in initial condition.

0905d310 · Mesh can now be fine inside, really fine at the boundary, coarse ou...

6defa12e · Adding to previous commit. Forgot to stage jupyter notebook.

d93d7c6b · Putting solver and mesh generation in for loop. Mesh now takes geom...

287ce717 · Comparison with Julia, seems to work in principle, but not extensiv...

ec86ed08 · Trying different search strategies.

52ed4469 · Starting error calculations.

9561f0bf · Prototyping optimization for low top geometry using fenics / scipy.

6bf261cf · Adding mesh for low top.

dfad6431 · Ramp outside in principal works.

e72a38b2 · Clean up commit.

d2cb03ce · Trying out 200mM data with low top geometry. Works in principle.

ca3342ec · Streamline mesh creation.

f19a2572 · Fixed typo in gradient, which fixes problem with volume fraction above

2b3e2247 · Gradient analytical not working, see note in bioRxiv submission App...

8251c3b2 · Refactor for efficient storage of effective droplet model

d8db07f1 · Correct and stratify plot_sim.

37d07599 · Starting work on checking steady state.

ecda0fc1 · Swapping A and B, for consistency with reaction-terms in the draft.