update notebooks

README.md

-# go-with-the-flow
-This repository is all about simulating flow driven pruning in biological flow networks. 
+# kirchhoff-circuits
+Collection of routines for creation and manipulation of Kirchhoff circuits based on resistor-only networks, together with 2D/3D spatial embeddings.

kirchhoff/draw_networkx.py

@@ -27,12 +27,12 @@ def plot_networkx(input_graph,**kwargs):
 
         if k in options:
             options[k]=v
-        if 'node_data' in kwargs:
-            for sk,sv in kwargs['node_data'].items():
-                node_data[sk]=sv.to_numpy()
-        if 'edge_data' in kwargs:
-            for sk,sv in kwargs['edge_data'].items():
-                edge_data[sk]=sv.to_numpy()
+    if 'node_data' in kwargs:
+        for sk,sv in kwargs['node_data'].items():
+            node_data[sk]=sv.to_numpy()
+    if 'edge_data' in kwargs:
+        for sk,sv in kwargs['edge_data'].items():
+            edge_data[sk]=sv.to_numpy()
 
     fig = go.Figure()
     add_traces_nodes(fig,options,input_graph,node_data)

kirchhoff/init_crystal.py

@@ -8,7 +8,6 @@
 import networkx as nx
 import numpy as np
 
-# not finalized! todo: implement peridoc cell definition
 # construct a non-trivial, periodic 3d embedding
 def init_graph_from_crystal(crystal_type,periods):
 

setup.py

@@ -6,8 +6,6 @@
 # @Last modified time: 2021-05-24T00:03:32+02:00
 # @License: MIT
 
-
-
 import setuptools
 
 with open("README.md", "r", encoding="utf-8") as fh:
@@ -15,10 +13,10 @@ with open("README.md", "r", encoding="utf-8") as fh:
 
 setuptools.setup(
     name="kirchhoff", # Replace with your own username
-    version="0.1.0",
+    version="0.1.1",
     author="felixk1990",
     author_email="felixuwekramer@protonmail.com",
-    description="Collecton of routines for creation and manipulation of Kirchhoff circuits based on resistor-only networks, together with 2D/3D spatial embeddings. ",
+    description="Collection of routines for creation and manipulation of Kirchhoff circuits based on resistor-only networks, together with 2D/3D spatial embeddings. ",
     long_description=long_description,
     long_description_content_type="text/markdown",
     url="https://github.com/felixk1990/kirchhoff-circuit",