... | ... | @@ -15,13 +15,9 @@ run `msps.py -h` to display a list of available flags and options. |
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Because of the complexity of the options from the command line,
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we recommend to customize the code in `peakStrainer.py` instead of settings all the flags from the command line version.
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To review the source code we recoment to start in the main method of the `peakStrainer.py` module.
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To review the source code we recommend to start in the main method of the `peakStrainer.py` module.
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The code should be readable and you can change it to your setting.
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**Please note that some options are not available in the GUI.
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one of the goals of the GUI is to maintain simplicity.
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This is why some options are only in the code.**
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### Select Scans
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A simple way to reduce the size of the file is by removing some scans.
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Scan can be removed based on:
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... | ... | @@ -32,7 +28,6 @@ Scan can be removed based on: |
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- By Sample, this is mainly for testing, you can get 1 out of every _N_ scans,
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ie. take 1 out of every 10 scans
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### Pre-filter Peaks
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At this stage we remove what seems to be random noise.
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first we combine the spectra that has the same preconditions,
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